Trending repositories for topic medical-imaging

AIGC-interview/CV-interview/LLMs-interview面试问题与答案集合仓，同时包含工作和科研过程中的新想法、新问题、新资源与新项目

医学影像数据集列表 『An Index for Medical Imaging Datasets』

Multi-platform, free open source software for visualization and image computing.

This is an official repo for fine-tuning SAM to customized medical images.

✨基于 3D 卷积神经网络(CNN)的阿尔兹海默智能诊断 Web 应用 Alzheimer's Intelligent Diagnosis Web Application based on 3D Convolutional Neural Network and the ADNI Dataset ✨ 🚩(with README in English) 📌含在线demo：医学影像识别系统，图像识...

[pip install medmnist] 18x Standardized Datasets for 2D and 3D Biomedical Image Classification

A set of common support code for medical imaging, surgical navigation, and related purposes.

Ultralytics Notebooks 🚀

Awesome CT Reconstruction

"Structure-Aware Sparse-View X-ray 3D Reconstruction" (CVPR 2024) - A Toolbox for CT reconstruction and X-ray Novel View Synthesis

Cornerstone is a set of JavaScript libraries that can be used to build web-based medical imaging applications. It provides a framework to build radiology applications such as the OHIF Viewer.

A collection of resources on applications of multi-modal learning in medical imaging.

Insight Toolkit (ITK) -- Official Repository. ITK builds on a proven, spatially-oriented architecture for processing, segmentation, and registration of scientific images in two, three, or more dimens...

A pytorch-based deep learning framework for multi-modal 2D/3D medical image segmentation

Drench yourself in Deep Learning, Reinforcement Learning, Machine Learning, Computer Vision, and NLP by learning from these exciting lectures!!

✨基于 3D 卷积神经网络(CNN)的阿尔兹海默智能诊断 Web 应用 Alzheimer's Intelligent Diagnosis Web Application based on 3D Convolutional Neural Network and the ADNI Dataset ✨ 🚩(with README in English) 📌含在线demo：医学影像识别系统，图像识...

Ultralytics Notebooks 🚀

This is an official repo for fine-tuning SAM to customized medical images.

Awesome CT Reconstruction

AIGC-interview/CV-interview/LLMs-interview面试问题与答案集合仓，同时包含工作和科研过程中的新想法、新问题、新资源与新项目

Multi-platform, free open source software for visualization and image computing.

A set of common support code for medical imaging, surgical navigation, and related purposes.

医学影像数据集列表 『An Index for Medical Imaging Datasets』

"Structure-Aware Sparse-View X-ray 3D Reconstruction" (CVPR 2024) - A Toolbox for CT reconstruction and X-ray Novel View Synthesis

[pip install medmnist] 18x Standardized Datasets for 2D and 3D Biomedical Image Classification

Cornerstone is a set of JavaScript libraries that can be used to build web-based medical imaging applications. It provides a framework to build radiology applications such as the OHIF Viewer.

A collection of resources on applications of multi-modal learning in medical imaging.

Insight Toolkit (ITK) -- Official Repository. ITK builds on a proven, spatially-oriented architecture for processing, segmentation, and registration of scientific images in two, three, or more dimens...

A pytorch-based deep learning framework for multi-modal 2D/3D medical image segmentation

Drench yourself in Deep Learning, Reinforcement Learning, Machine Learning, Computer Vision, and NLP by learning from these exciting lectures!!

AIGC-interview/CV-interview/LLMs-interview面试问题与答案集合仓，同时包含工作和科研过程中的新想法、新问题、新资源与新项目

医学影像数据集列表 『An Index for Medical Imaging Datasets』

Medical SAM 2: Segment Medical Images As Video Via Segment Anything Model 2

Multi-platform, free open source software for visualization and image computing.

Adapting Segment Anything Model for Medical Image Segmentation

Medical Image Segmentation with Diffusion Model

A list of Medical imaging datasets.

Cornerstone is a set of JavaScript libraries that can be used to build web-based medical imaging applications. It provides a framework to build radiology applications such as the OHIF Viewer.

A vision-language foundation model for computational pathology - Nature Medicine

A collection of resources on applications of multi-modal learning in medical imaging.

MedRAX: Medical Reasoning Agent for Chest X-ray

Ultralytics Notebooks 🚀

"Structure-Aware Sparse-View X-ray 3D Reconstruction" (CVPR 2024) - A Toolbox for CT reconstruction and X-ray Novel View Synthesis

[pip install medmnist] 18x Standardized Datasets for 2D and 3D Biomedical Image Classification

Diffusion Models in Medical Imaging (Published in Medical Image Analysis Journal)

A pytorch-based deep learning framework for multi-modal 2D/3D medical image segmentation

MedViT: A Robust Vision Transformer for Generalized Medical Image Classification (Computers in Biology and Medicine 2023)

DICOM Web Viewer: open source zero footprint medical image library.

The MAMA-MIA Dataset: A Multi-Center Breast Cancer DCE-MRI Public Dataset with Expert Segmentations

✨基于 3D 卷积神经网络(CNN)的阿尔兹海默智能诊断 Web 应用 Alzheimer's Intelligent Diagnosis Web Application based on 3D Convolutional Neural Network and the ADNI Dataset ✨ 🚩(with README in English) 📌含在线demo：医学影像识别系统，图像识...

Ultralytics Notebooks 🚀

The MAMA-MIA Dataset: A Multi-Center Breast Cancer DCE-MRI Public Dataset with Expert Segmentations

MedViTV2: Medical Image Classification with KAN-Integrated Transformers and Dilated Neighborhood Attention

A collection of papers published in MICCAI 2024 with their code.

✨基于 3D 卷积神经网络(CNN)的阿尔兹海默智能诊断 Web 应用 Alzheimer's Intelligent Diagnosis Web Application based on 3D Convolutional Neural Network and the ADNI Dataset ✨ 🚩(with README in English) 📌含在线demo：医学影像识别系统，图像识...

MedViT: A Robust Vision Transformer for Generalized Medical Image Classification (Computers in Biology and Medicine 2023)

This repo is the official implementation of "Classification of Brain Disorders in rs-fMRI via Local-to-Global Graph Neural Networks" published in IEEE Transactions on Medical Imaging.

This is an official repo for fine-tuning SAM to customized medical images.

comprehensive library of 3D transmission Computed Tomography (CT) algorithms with Python and C++ APIs, a PyQt GUI, and fully integrated with PyTorch

RET-CLIP: A Retinal Image Foundation Model Pre-trained with Clinical Diagnostic Reports

Official implementation of "Exploiting Scale-Variant Attention for Segmenting Small Medical Objects"

A vision-language foundation model for computational pathology - Nature Medicine

AIGC-interview/CV-interview/LLMs-interview面试问题与答案集合仓，同时包含工作和科研过程中的新想法、新问题、新资源与新项目

Medical SAM 2: Segment Medical Images As Video Via Segment Anything Model 2

"Neural Attenuation Fields for Sparse-View CBCT Reconstruction" (MICCAI 2022 Oral)

User-oriented public repository of Gate (macros, examples and user contributions)

Awesome CT Reconstruction

Cornerstone is a set of JavaScript libraries that can be used to build web-based medical imaging applications. It provides a framework to build radiology applications such as the OHIF Viewer.

MONAI Deploy App SDK offers a framework and associated tools to design, develop and verify AI-driven applications in the healthcare imaging domain.

[ICLR 2024 Oral] Supervised Pre-Trained 3D Models for Medical Image Analysis (9,262 CT volumes + 25 annotated classes)

AIGC-interview/CV-interview/LLMs-interview面试问题与答案集合仓，同时包含工作和科研过程中的新想法、新问题、新资源与新项目

医学影像数据集列表 『An Index for Medical Imaging Datasets』

MedRAX: Medical Reasoning Agent for Chest X-ray

Medical SAM 2: Segment Medical Images As Video Via Segment Anything Model 2

OHIF zero-footprint DICOM viewer and oncology specific Lesion Tracker, plus shared extension packages

Diffusion Models in Medical Imaging (Published in Medical Image Analysis Journal)

Multi-platform, free open source software for visualization and image computing.

A collection of resources on applications of multi-modal learning in medical imaging.

A list of Medical imaging datasets.

Adapting Segment Anything Model for Medical Image Segmentation

[pip install medmnist] 18x Standardized Datasets for 2D and 3D Biomedical Image Classification

Medical Image Segmentation with Diffusion Model

Drench yourself in Deep Learning, Reinforcement Learning, Machine Learning, Computer Vision, and NLP by learning from these exciting lectures!!

Ultralytics Notebooks 🚀

[IEEE TMI] Official Implementation for UNet++

Cornerstone is a set of JavaScript libraries that can be used to build web-based medical imaging applications. It provides a framework to build radiology applications such as the OHIF Viewer.

A pytorch-based deep learning framework for multi-modal 2D/3D medical image segmentation

3D medical imaging reconstruction software

A vision-language foundation model for computational pathology - Nature Medicine

Weasis is a web-based DICOM viewer for advanced medical imaging and seamless PACS integration.

Ultralytics Notebooks 🚀

The MAMA-MIA Dataset: A Multi-Center Breast Cancer DCE-MRI Public Dataset with Expert Segmentations

MedViTV2: Medical Image Classification with KAN-Integrated Transformers and Dilated Neighborhood Attention

A collection of papers published in MICCAI 2024 with their code.

RET-CLIP: A Retinal Image Foundation Model Pre-trained with Clinical Diagnostic Reports

3D Slicer nnUNet integration to streamline usage for nnUNet based AI extensions.

Official PyTorch implementation of SelfRDB, a diffusion bridge model for multi-modal medical image synthesis

MIST: A simple and scalable end-to-end framework for 3D medical imaging segmentation.

MedRAX: Medical Reasoning Agent for Chest X-ray

[MICCAI'2024, Oral] Official implementation of the Brain Latent Progression (BrLP) method from "Enhancing Spatiotemporal Disease Progression Models via Latent Diffusion and Prior Knowledge"

A curated list of awesome resources, papers, datasets, and tools related to AI in radiology. This repository aims to provide a comprehensive collection of materials to facilitate research, learning, a...

Medical SAM 2: Segment Medical Images As Video Via Segment Anything Model 2

This is an official repo for fine-tuning SAM to customized medical images.

LinaQA (pronounced Linakwa) is a GUI frontend for pylinac and pydicom.

【MICCAI 2023, Early accept】DisC-Diff: Disentangled Conditional Diffusion Model for Multi-Contrast MRI Super-Resolution

✨基于 3D 卷积神经网络(CNN)的阿尔兹海默智能诊断 Web 应用 Alzheimer's Intelligent Diagnosis Web Application based on 3D Convolutional Neural Network and the ADNI Dataset ✨ 🚩(with README in English) 📌含在线demo：医学影像识别系统，图像识...

Easy and Clear Pipeline With LLM-Automation to Preprocess Medical Image for Everybody

AIGC-interview/CV-interview/LLMs-interview面试问题与答案集合仓，同时包含工作和科研过程中的新想法、新问题、新资源与新项目

Awesome Medical Imaging Datasets

Official implementation of "Exploiting Scale-Variant Attention for Segmenting Small Medical Objects"

Medical SAM 2: Segment Medical Images As Video Via Segment Anything Model 2

MedRAX: Medical Reasoning Agent for Chest X-ray

Computation-Efficient Era: A Comprehensive Survey of State Space Models in Medical Image Analysis

This is an official repo for fine-tuning SAM to customized medical images.

Replacing Mamba with xLSTM! It works better. We show that xLSTM-Unet can be an effective semantic segmentation backbone.

[MICCAI'2024, Oral] Official implementation of the Brain Latent Progression (BrLP) method from "Enhancing Spatiotemporal Disease Progression Models via Latent Diffusion and Prior Knowledge"

Ultralytics Notebooks 🚀

Code for the paper "SelfReg-UNet: Self-Regularized UNet for Medical Image Segmentation "

Official implementation of "Exploiting Scale-Variant Attention for Segmenting Small Medical Objects"

Official PyTorch implementation of SelfRDB, a diffusion bridge model for multi-modal medical image synthesis

RET-CLIP: A Retinal Image Foundation Model Pre-trained with Clinical Diagnostic Reports

Easy and Clear Pipeline With LLM-Automation to Preprocess Medical Image for Everybody

A collection of papers published in MICCAI 2024 with their code.

MedViTV2: Medical Image Classification with KAN-Integrated Transformers and Dilated Neighborhood Attention

【ACCVW2025 Oral】Offical Pytorch Code for "SkinMamba: A Precision Skin Lesion Segmentation Architecture with Cross-Scale Global State Modeling and Frequency Boundary Guidance"

LinaQA (pronounced Linakwa) is a GUI frontend for pylinac and pydicom.

Official implementation of DenoMamba: A fused state-space model for low-dose CT denoising

A curated list of awesome resources, papers, datasets, and tools related to AI in radiology. This repository aims to provide a comprehensive collection of materials to facilitate research, learning, a...

【ICASSP2025 Oral】Offical Pytorch Code for "OCTAMamba: A State-Space Model Approach for Precision OCTA Vasculature Segmentation"

AIGC-interview/CV-interview/LLMs-interview面试问题与答案集合仓，同时包含工作和科研过程中的新想法、新问题、新资源与新项目

医学影像数据集列表 『An Index for Medical Imaging Datasets』

Drench yourself in Deep Learning, Reinforcement Learning, Machine Learning, Computer Vision, and NLP by learning from these exciting lectures!!

OHIF zero-footprint DICOM viewer and oncology specific Lesion Tracker, plus shared extension packages

Diffusion Models in Medical Imaging (Published in Medical Image Analysis Journal)

Medical SAM 2: Segment Medical Images As Video Via Segment Anything Model 2

MedRAX: Medical Reasoning Agent for Chest X-ray

"Structure-Aware Sparse-View X-ray 3D Reconstruction" (CVPR 2024) - A Toolbox for CT reconstruction and X-ray Novel View Synthesis

Multi-platform, free open source software for visualization and image computing.

A collection of resources on applications of multi-modal learning in medical imaging.

A list of Medical imaging datasets.

Medical Image Segmentation with Diffusion Model

Adapting Segment Anything Model for Medical Image Segmentation

A vision-language foundation model for computational pathology - Nature Medicine

[IEEE TMI] Official Implementation for UNet++

Cornerstone is a set of JavaScript libraries that can be used to build web-based medical imaging applications. It provides a framework to build radiology applications such as the OHIF Viewer.

"Radiative Gaussian Splatting for Efficient X-ray Novel View Synthesis" (ECCV 2024)

Computation-Efficient Era: A Comprehensive Survey of State Space Models in Medical Image Analysis

[ICLR 2024 Oral] Supervised Pre-Trained 3D Models for Medical Image Analysis (9,262 CT volumes + 25 annotated classes)

A pytorch-based deep learning framework for multi-modal 2D/3D medical image segmentation

MedRAX: Medical Reasoning Agent for Chest X-ray

Replacing Mamba with xLSTM! It works better. We show that xLSTM-Unet can be an effective semantic segmentation backbone.

"Structure-Aware Sparse-View X-ray 3D Reconstruction" (CVPR 2024) - A Toolbox for CT reconstruction and X-ray Novel View Synthesis

"Radiative Gaussian Splatting for Efficient X-ray Novel View Synthesis" (ECCV 2024)

Developed the ViViT model for medical video classification, enhancing 3D organ image analysis using transformer-based architectures.

A Hybrid CNN-Transformer Architecture for Precise Medical Image Segmentation

LinaQA (pronounced Linakwa) is a GUI frontend for pylinac and pydicom.

AIGC-interview/CV-interview/LLMs-interview面试问题与答案集合仓，同时包含工作和科研过程中的新想法、新问题、新资源与新项目

Transparent medical image AI via an image–text foundation model grounded in medical literature

A vision-language foundation model for computational pathology - Nature Medicine

BIBM2023 regular paper for "Addressing Sparse Annotation: a Novel Semantic Energy Loss for Tumor Cell Detection from Histopathologic Images"

[ECCV 2024] ScribblePrompt: Fast and Flexible Interactive Segmentation for Any Medical Image

A curated list of awesome DICOM resources and libraries.

comprehensive library of 3D transmission Computed Tomography (CT) algorithms with Python and C++ APIs, a PyQt GUI, and fully integrated with PyTorch

MedViTV2: Medical Image Classification with KAN-Integrated Transformers and Dilated Neighborhood Attention

[CVPR 2024] Intraoperative 2D/3D registration via differentiable X-ray rendering

[Nature Machine Intelligence 2024] Code and evaluation repository for the paper

Multimodal Brain mpMRI segmentation on BraTS 2023 and BraTS 2021 datasets.

✨基于 3D 卷积神经网络(CNN)的阿尔兹海默智能诊断 Web 应用 Alzheimer's Intelligent Diagnosis Web Application based on 3D Convolutional Neural Network and the ADNI Dataset ✨ 🚩(with README in English) 📌含在线demo：医学影像识别系统，图像识...

[ICLR 2024 Oral] Supervised Pre-Trained 3D Models for Medical Image Analysis (9,262 CT volumes + 25 annotated classes)