Trending repositories for topic synthetic-biology

CodonTransformer: The ultimate tool for codon optimization, optimizing DNA sequences for heterologous protein expression across 164 species.

:eye: Python library to plot DNA sequence features (e.g. from Genbank files)

A Go package for designing DNA.

BGC Detection and Classification Using Deep Learning

:pencil2: A versatile DNA sequence optimizer

A Go package for engineering organisms.

Open source biolab

a JavaScript DNA, RNA, and protein sequence viewer

CodonTransformer: The ultimate tool for codon optimization, optimizing DNA sequences for heterologous protein expression across 164 species.

A Go package for designing DNA.

BGC Detection and Classification Using Deep Learning

:eye: Python library to plot DNA sequence features (e.g. from Genbank files)

Open source biolab

:pencil2: A versatile DNA sequence optimizer

a JavaScript DNA, RNA, and protein sequence viewer

A Go package for engineering organisms.

CodonTransformer: The ultimate tool for codon optimization, optimizing DNA sequences for heterologous protein expression across 164 species.

A Go package for designing DNA.

CodonTransformer: The ultimate tool for codon optimization, optimizing DNA sequences for heterologous protein expression across 164 species.

A Go package for engineering organisms.

:eye: Python library to plot DNA sequence features (e.g. from Genbank files)

Open source biolab

a JavaScript DNA, RNA, and protein sequence viewer

:pencil2: A versatile DNA sequence optimizer

A Go package for designing DNA.

BGC Detection and Classification Using Deep Learning

Genetic circuit design automation

teemi: A Python package for reproducible and FAIR microbial strain construction. Simulate the entire dbtl-cycle, generate genetic parts, design libraries, and track samples. Open-source Python platfor...

For finding, sharing and exchanging Data, Models, Simulations and Processes in Science.

Reinforcement Learning based bioretrosynthesis tool

Cello v2 is the continuation of the Cello genetic circuit design software.

:alembic: Simple cloning simulator (Golden Gate etc.) for single and combinatorial assemblies

Official and maintained implementation of the paper "Attention-Based Transformers for Instance Segmentation of Cells in Microstructures" [BIBM 2020].

Web application enabling users and software to browse, upload, and share synthetic biology designs

The resources I always recommend to new synthetic biologists.

Interpretable genotype-phenotype landscape modeling

Open source biolab

teemi: A Python package for reproducible and FAIR microbial strain construction. Simulate the entire dbtl-cycle, generate genetic parts, design libraries, and track samples. Open-source Python platfor...

a JavaScript DNA, RNA, and protein sequence viewer

BGC Detection and Classification Using Deep Learning

Reinforcement Learning based bioretrosynthesis tool

Cello v2 is the continuation of the Cello genetic circuit design software.

:eye: Python library to plot DNA sequence features (e.g. from Genbank files)

:pencil2: A versatile DNA sequence optimizer

For finding, sharing and exchanging Data, Models, Simulations and Processes in Science.

A Go package for engineering organisms.

:alembic: Simple cloning simulator (Golden Gate etc.) for single and combinatorial assemblies

Interpretable genotype-phenotype landscape modeling

Web application enabling users and software to browse, upload, and share synthetic biology designs

The resources I always recommend to new synthetic biologists.

Official and maintained implementation of the paper "Attention-Based Transformers for Instance Segmentation of Cells in Microstructures" [BIBM 2020].

Genetic circuit design automation