berenslab / umi-normalization

Companion repository to Lause, Berens & Kobak (2021): "Analytic Pearson residuals for normalization of single-cell RNA-seq UMI data", Genome Biology

Date Created 2020-10-15 (4 years ago)

Commits 56 (last one 2 years ago)

Stargazers 41 (0 this week)

Watchers 8 (0 this week)

Forks 2

License agpl-3.0

Ranking

RepositoryStats indexes 595,856 repositories, of these berenslab/umi-normalization is ranked #515,470 (13th percentile) for total stargazers, and #246,776 for total watchers. Github reports the primary language for this repository as Jupyter Notebook, for repositories using this language it is ranked #14,113/17,543.

Other Information

berenslab/umi-normalization has Github issues enabled, there are 2 open issues and 1 closed issue.

There have been 1 release, the latest one was published on 2021-07-31 (3 years ago) with the name Submission v3.

Homepage URL: https://doi.org/10.1186/s13059-021-02451-7

All Topics

scrna t-sne glm-pca umi-count normalization gene-selection umi-count-matrix negative-binomial single-cell-rna-seq single-cell-analysis negative-binomial-model dimensionality-reduction negative-binomial-regression

Star History

Github stargazers over time

Watcher History

Github watchers over time, collection started in '23

Recent Commit History

7 commits on the default branch (main) since jan '22

Yearly Commits

Commits to the default branch (main) per year

Issue History

Languages

The primary language is Jupyter Notebook but there's also others...

updated: 2024-09-06 @ 08:15pm, id: 304331088 / R_kgDOEiO5UA