berenslab / umi-normalization

Companion repository to Lause, Berens & Kobak (2021): "Analytic Pearson residuals for normalization of single-cell RNA-seq UMI data", Genome Biology

Date Created 2020-10-15 (4 years ago)

Commits 56 (last one 2 years ago)

Stargazers 41 (0 this week)

Watchers 8 (0 this week)

Forks 2

License agpl-3.0

Ranking

RepositoryStats indexes 579,555 repositories, of these berenslab/umi-normalization is ranked #503,912 (13th percentile) for total stargazers, and #244,081 for total watchers. Github reports the primary language for this repository as Jupyter Notebook, for repositories using this language it is ranked #13,674/16,901.

Other Information

berenslab/umi-normalization has Github issues enabled, there are 2 open issues and 1 closed issue.

There have been 1 release, the latest one was published on 2021-07-31 (3 years ago) with the name Submission v3.

Homepage URL: https://doi.org/10.1186/s13059-021-02451-7

All Topics

scrna t-sne glm-pca umi-count normalization gene-selection umi-count-matrix negative-binomial single-cell-rna-seq single-cell-analysis negative-binomial-model dimensionality-reduction negative-binomial-regression

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7 commits on the default branch (main) since jan '22

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The primary language is Jupyter Notebook but there's also others...

updated: 2024-09-06 @ 08:15pm, id: 304331088 / R_kgDOEiO5UA