Daniel-Liu-c0deb0t / UMICollapse

Accelerating the deduplication and collapsing process for reads with Unique Molecular Identifiers (UMI). Heavily optimized for scalability and orders of magnitude faster than a previous tool.

Date Created 2019-02-25 (5 years ago)

Commits 99 (last one 7 months ago)

Stargazers 63 (0 this week)

Watchers 3 (0 this week)

Forks 8

License mit

Ranking

RepositoryStats indexes 584,777 repositories, of these Daniel-Liu-c0deb0t/UMICollapse is ranked #396,898 (32nd percentile) for total stargazers, and #422,609 for total watchers. Github reports the primary language for this repository as Java, for repositories using this language it is ranked #21,221/28,277.

Daniel-Liu-c0deb0t/UMICollapse is also tagged with popular topics, for these it's ranked: java (#6,027/7690), data-structures (#625/833)

Other Information

Daniel-Liu-c0deb0t/UMICollapse has 1 open pull request on Github, 0 pull requests have been merged over the lifetime of the repository.

Github issues are enabled, there are 19 open issues and 12 closed issues.

There have been 1 release, the latest one was published on 2023-07-07 (about a year ago) with the name Release v1.0.0.

All Topics

java umis fastq hamming deduplication string-search data-structures string-similarity unique-molecular-identifiers

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Recent Commit History

5 commits on the default branch (master) since jan '22

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The primary language is Java but there's also others...

updated: 2024-09-26 @ 08:15am, id: 172407150 / R_kgDOCka5bg