liaoherui / StrainScan

High-resolution strain-level microbiome composition analysis tool based on reference genomes and k-mers

Date Created 2021-04-15 (3 years ago)

Commits 192 (last one 5 months ago)

Stargazers 38 (0 this week)

Watchers 4 (0 this week)

Forks 5

License mit

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RepositoryStats indexes 565,600 repositories, of these liaoherui/StrainScan is ranked #508,503 (10th percentile) for total stargazers, and #366,616 for total watchers. Github reports the primary language for this repository as Python, for repositories using this language it is ranked #98,019/111,362.

Other Information

liaoherui/StrainScan has 1 open pull request on Github, 1 pull request has been merged over the lifetime of the repository.

Github issues are enabled, there are 8 open issues and 14 closed issues.

Homepage URL: https://microbiomejournal.biomedcentral.com/articles/10.1186/s40168-023-01615-w

All Topics

k-mers strains metagenomics reference-based bacterial-genomes

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150 commits on the default branch (main) since jan '22

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updated: 2024-09-22 @ 08:40pm, id: 358219847 / R_kgDOFVoARw