5 results found Sort:

spacegraphcats
spacegraphcats spacegraphcats
15
117
other
13
Indexing & querying large assembly graphs -- in space, no one can hear you miao!
k-mers metagenomics bioinformatics
Created 2016-05-06
1,347 commits to latest branch, last one about a year ago
bingmann
cobs bingmann
15
83
mit
11
COBS - Compact Bit-Sliced Signature Index (for Genomic k-Mer Data or q-Grams)
dna cobs index k-mers
Created 2019-03-19
455 commits to master branch, last one 10 months ago
imartayan
CBL imartayan
0
44
mit
2
A Rust library providing fully dynamic sets of k-mers with high locality
rust k-mers dynamic indexing bioinformatics
Created 2023-12-11
257 commits to main branch, last one about a month ago
jermp
lphash jermp
2
43
mit
5
Fast and compact locality-preserving minimal perfect hashing for k-mer sets.
k-mers hashing bioinformatics locality-preserving minimal-perfect-hash
Created 2022-09-13
159 commits to main branch, last one about a year ago
liaoherui
StrainScan liaoherui
5
39
mit
4
High-resolution strain-level microbiome composition analysis tool based on reference genomes and k-mers
k-mers strains metagenomics reference-based bacterial-genomes
Created 2021-04-15
192 commits to main branch, last one 7 months ago