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Official git repository for Biopython (originally converted from CVS)
Created
2009-03-15
15,828 commits to master branch, last one a day ago
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
Created
2017-11-23
2,374 commits to r1.6.1 branch, last one 2 months ago
Official code repository for GATK versions 4 and up
Created
2014-12-02
4,673 commits to master branch, last one 9 days ago
Data intensive science for everyone.
Created
2015-02-23
76,938 commits to dev branch, last one a day ago
tools for working with genome variation graphs
Created
2014-10-02
16,053 commits to master branch, last one a day ago
Python and C++ code for reading and writing genomics data.
This repository has been archived
(exclude archived)
Created
2018-03-26
446 commits to v0.6.0 branch, last one 2 years ago
In-memory nucleotide sequence k-mer counting, filtering, graph traversal and more
Created
2012-05-15
6,672 commits to master branch, last one 5 years ago
A Go package for engineering organisms.
Created
2020-05-29
487 commits to main branch, last one about a month ago
Efficient pythonic random access to fasta subsequences
Created
2013-09-12
871 commits to master branch, last one about a month ago
Jupyter Notebooks for learning the PyRosetta platform for biomolecular structure prediction and design
Created
2019-05-24
591 commits to master branch, last one 4 months ago
🧬 Nucleotide Transformer: Building and Evaluating Robust Foundation Models for Human Genomics
Created
2023-01-24
66 commits to main branch, last one 20 days ago
A tool to map bisulfite converted sequence reads and determine cytosine methylation states
Created
2015-11-07
940 commits to master branch, last one 2 months ago
Protein-protein, protein-peptide and protein-DNA docking framework based on the GSO algorithm
dna
docking
protein
peptides
chemistry
proteomics
bioinformatics
protein-design
protein-docking
molecular-biology
protein-structure
structural-biology
swarm-intelligence
bioinformatics-tool
molecular-structures
artificial-intelligence
protein-dna-interactions
structural-bioinformatics
glowworm-swarm-optimization
protein-protein-interaction
Created
2019-09-27
488 commits to master branch, last one 4 months ago
A Java API for high-throughput sequencing data (HTS) formats.
Created
2014-04-29
2,838 commits to master branch, last one 9 days ago
a python package for fast random access to sequences from plain and gzipped FASTA/Q files
Created
2019-03-19
604 commits to master branch, last one 3 months ago
a JavaScript DNA, RNA, and protein sequence viewer
Created
2019-04-24
759 commits to develop branch, last one 2 months ago
UGENE is free open-source cross-platform bioinformatics software
Created
2016-03-11
16,975 commits to master branch, last one 3 days ago
Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement
Created
2020-06-12
6,213 commits to master branch, last one a day ago
[ICLR 2024] DNABERT-2: Efficient Foundation Model and Benchmark for Multi-Species Genome
Created
2023-06-23
25 commits to main branch, last one 2 days ago
A collection of scripts and notes related to genomics and bioinformatics
Created
2015-12-22
115 commits to master branch, last one about a year ago
Genomic Pre-trained Network
Created
2022-02-22
292 commits to main branch, last one 5 months ago
Clone with Python! Data structures for double stranded DNA & simulation of homologous recombination, Gibson assembly, cut & paste cloning.
Created
2015-02-04
1,736 commits to master branch, last one about a month ago
GENA-LM is a transformer masked language model trained on human DNA sequence.
Created
2022-06-20
21 commits to main branch, last one 7 months ago
tools for genetic genealogy and the analysis of consumer DNA test results
Created
2017-06-28
418 commits to master branch, last one 2 months ago
Revolutionizing DNA analysis and making it accessible to all through innovative AI-powered analysis and interpretive tools.
Created
2022-07-31
1,311 commits to main branch, last one 16 days ago
Bioinformatics toolkits for manipulating sequence, alignment, and phylogenetic tree files
Created
2015-01-15
1,989 commits to master branch, last one 2 years ago
Generate input parameters and coordinates for atomistic and coarse-grained simulations of polymers, ssDNA, and carbohydrates
Created
2020-04-05
1,282 commits to master branch, last one 27 days ago
A curated list of awesome personal genomics software, libraries, and educational resources.
Created
2017-12-02
31 commits to master branch, last one 3 months ago
🍙 my Personalized Development Environment [PDE]
Created
2021-08-28
906 commits to main branch, last one 11 months ago
Scalable annotated de Bruijn graphs for DNA indexing, alignment, and assembly
Created
2016-08-10
2,499 commits to master branch, last one 21 days ago