6 results found Sort:

broadinstitute
gatk broadinstitute
594
1.7k
other
153
Official code repository for GATK versions 4 and up
dna ngs gatk spark genome science genomics sequencing bioinformatics
Created 2014-12-02
4,724 commits to master branch, last one a day ago
snakemake-workflows
dna-seq-gatk-variant-calling snakemake-workflows
147
243
mit
10
This Snakemake pipeline implements the GATK best-practices workflow
gatk snakemake sciworkflows reproducibility genomic-variant-calling
Created 2018-06-28
125 commits to main branch, last one 3 years ago
davetang
learning_vcf_file davetang
40
137
mit
10
Learning the Variant Call Format
vcf gatk bcftools vcftools vcf-files vcf-format call-variants multi-sample-vcf
Created 2015-06-05
172 commits to main branch, last one 8 months ago
CRG-CNAG
CalliNGS-NF CRG-CNAG
54
132
mpl-2.0
9
GATK RNA-Seq Variant Calling in Nextflow
ngs gatk rna-seq genomics nextflow bioinformatics variant-calling
Created 2017-02-28
171 commits to master branch, last one 3 years ago
GenomicsDB
GenomicsDB GenomicsDB
17
95
other
11
High performance data storage for importing, querying and transforming variants.
cpp mpi gatk java scala spark variant genomics genomicsdb bioinformatics variant-calling precision-medicine
Created 2018-08-03
1,959 commits to master branch, last one about a month ago
lynnlangit
TeamTeri lynnlangit
17
53
unknown
11
Bioinformatics on GCP, AWS or Azure
aws gcp gatk azure variants variant-calls bioinformatics cancer-genomics genome-analysis genome-sequencing genomics-analysis
Created 2016-10-04
561 commits to master branch, last one 5 months ago