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DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
Created
2017-11-23
2,374 commits to r1.6.1 branch, last one 8 months ago
An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)
Created
2017-10-31
459 commits to master branch, last one 13 days ago
Official code repository for GATK versions 4 and up
Created
2014-12-02
4,724 commits to master branch, last one a day ago
Data intensive science for everyone.
Created
2015-02-23
79,413 commits to dev branch, last one 19 hours ago
C library for high-throughput sequencing data formats
Created
2012-05-15
3,329 commits to develop branch, last one a day ago
Pysam is a Python package for reading, manipulating, and writing genomics data such as SAM/BAM/CRAM and VCF/BCF files. It's a lightweight wrapper of the HTSlib API, the same one that powers samtools, ...
Created
2014-02-05
2,303 commits to master branch, last one 22 days ago
Tools to process and analyze deep sequencing data.
Created
2013-07-08
3,487 commits to master branch, last one 8 months ago
A collection of awesome things regarding all omics.
Created
2022-02-15
216 commits to main branch, last one 10 months ago
Java utilities for Bioinformatics
Created
2013-05-06
3,293 commits to master branch, last one 3 months ago
A One-Click System for Analyzing Loop-Resolution Hi-C Experiments
Created
2015-12-24
404 commits to main branch, last one 2 months ago
Customizable workflows based on snakemake and python for the analysis of NGS data
Created
2016-03-23
4,059 commits to master branch, last one 29 days ago
Bioconvert is a collaborative project to facilitate the interconversion of life science data from one format to another.
Created
2017-10-11
1,920 commits to main branch, last one 11 months ago
Tools for working with genomic and high throughput sequencing data.
Created
2016-03-03
732 commits to main branch, last one 19 days ago
A collection of Galaxy-related training material
Created
2015-06-29
28,421 commits to main branch, last one 14 hours ago
A Java API for high-throughput sequencing data (HTS) formats.
Created
2014-04-29
2,848 commits to master branch, last one 22 days ago
SortMeRNA: next-generation sequence filtering and alignment tool
Created
2014-03-14
1,343 commits to master branch, last one about a month ago
Annotation and Ranking of Structural Variation
Created
2019-07-09
254 commits to master branch, last one 2 months ago
UGENE is free open-source cross-platform bioinformatics software
Created
2016-03-11
17,056 commits to master branch, last one a day ago
A cool place to store your Hi-C
Created
2016-01-13
1,085 commits to master branch, last one 29 days ago
R package for analyzing single-cell RNA-seq data
Created
2015-05-06
157 commits to main branch, last one about a year ago
Automated and customizable preprocessing of Next-Generation Sequencing data, including full (sc)ATAC-seq, ChIP-seq, and (sc)RNA-seq workflows. Works equally easy with public as local data.
Created
2019-07-11
1,483 commits to master branch, last one 9 months ago
Transcript discovery and quantification with long RNA reads (Nanopores and PacBio)
Created
2020-04-15
1,397 commits to master branch, last one a day ago
Detect and visualize target mutations by scanning FastQ files directly
Created
2016-07-23
259 commits to master branch, last one 2 years ago
Cloud agnostic genomics analysis, scientific computation and storage platform
Created
2019-03-06
6,029 commits to develop branch, last one 23 hours ago
Sequana: a set of Snakemake NGS pipelines
Created
2016-03-07
6,389 commits to main branch, last one about a month ago
NGLess: NGS with less work
Created
2013-01-08
2,453 commits to main branch, last one 3 months ago
Pathogen NGS Documentary
Created
2018-05-17
152 commits to main branch, last one 7 months ago
Rare variant test software for next generation sequencing data
Created
2013-01-09
1,204 commits to master branch, last one 3 years ago
GATK RNA-Seq Variant Calling in Nextflow
Created
2017-02-28
171 commits to master branch, last one 3 years ago
V-pipe is a pipeline designed for analysing NGS data of short viral genomes
Created
2017-04-10
1,173 commits to master branch, last one 4 months ago