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htslib samtools

445

834

other

62

C library for high-throughput sequencing data formats

bam bcf ngs sam vcf cram htslib bioinformatics

Created 2012-05-15

3,343 commits to develop branch, last one 6 days ago

pysam pysam-developers

278

812

mit

46

Pysam is a Python package for reading, manipulating, and writing genomics data such as SAM/BAM/CRAM and VCF/BCF files. It's a lightweight wrapper of the HTSlib API, the same one that powers samtools, ...

ngs htslib python bioinformatics

Created 2014-02-05

2,320 commits to master branch, last one about a month ago

seqan seqan

171

487

other

41

SeqAn's official repository.

bwt simd blast cpp14 fasta seqan htslib sam-bam indexing alignment suffixarray fastq-format bioinfomatics high-performance sequence-alignments

Created 2012-10-25

8,391 commits to main branch, last one 6 days ago

cyvcf2 brentp

72

392

mit

6

cython + htslib == fast VCF and BCF processing

vcf cython htslib genomics bioinformatics

Created 2015-08-12

528 commits to main branch, last one 6 months ago

paragraph Illumina

28

156

other

17

Graph realignment tools for structural variants

vcf htslib genotyping variant-calling structural-variation

Created 2017-11-24

33 commits to master branch, last one 2 years ago

hts-nim brentp

27

155

mit

9

nim wrapper for htslib for parsing genomics data files

nim htslib genomics nim-lang bioinformatics high-throughput-sequencing

Created 2017-08-15

383 commits to master branch, last one 6 months ago

SeqLib walaj

37

137

other

18

C++ htslib/bwa-mem/fermi interface for interrogating sequence data

fermi htslib bwa-mem c-plus-plus sequence-alignments

Created 2015-05-07

616 commits to master branch, last one 10 months ago