7 results found Sort:

samtools
htslib samtools
443
815
other
62
C library for high-throughput sequencing data formats
bam bcf ngs sam vcf cram htslib bioinformatics
Created 2012-05-15
3,330 commits to develop branch, last one 12 days ago
pysam-developers
pysam pysam-developers
274
792
mit
47
Pysam is a Python package for reading, manipulating, and writing genomics data such as SAM/BAM/CRAM and VCF/BCF files. It's a lightweight wrapper of the HTSlib API, the same one that powers samtools, ...
ngs htslib python bioinformatics
Created 2014-02-05
2,303 commits to master branch, last one about a month ago
seqan
seqan seqan
171
485
other
42
SeqAn's official repository.
bwt simd blast cpp14 fasta seqan htslib sam-bam indexing alignment suffixarray fastq-format bioinfomatics high-performance sequence-alignments
Created 2012-10-25
8,371 commits to main branch, last one 2 days ago
brentp
cyvcf2 brentp
72
383
mit
7
cython + htslib == fast VCF and BCF processing
vcf cython htslib genomics bioinformatics
Created 2015-08-12
528 commits to main branch, last one 3 months ago
Illumina
paragraph Illumina
28
156
other
19
Graph realignment tools for structural variants
vcf htslib genotyping variant-calling structural-variation
Created 2017-11-24
33 commits to master branch, last one 2 years ago
brentp
hts-nim brentp
26
155
mit
10
nim wrapper for htslib for parsing genomics data files
nim htslib genomics nim-lang bioinformatics high-throughput-sequencing
Created 2017-08-15
383 commits to master branch, last one 3 months ago
walaj
SeqLib walaj
36
133
other
19
C++ htslib/bwa-mem/fermi interface for interrogating sequence data
fermi htslib bwa-mem c-plus-plus sequence-alignments
Created 2015-05-07
616 commits to master branch, last one 7 months ago