6 results found Sort:

vcflib
vcflib vcflib
220
616
mit
39
C++ library and cmdline tools for parsing and manipulating VCF files with python and zig bindings
genomics genotyping haplotypecaller variant-calling vcf-manipulation
Created 2010-09-22
1,504 commits to master branch, last one 5 months ago
Illumina
paragraph Illumina
28
150
other
19
Graph realignment tools for structural variants
vcf htslib genotyping variant-calling structural-variation
Created 2017-11-24
33 commits to master branch, last one about a year ago
tseemann
nullarbor tseemann
37
134
gpl-2.0
20
:floppy_disk: :page_with_curl: "Reads to report" for public health and clinical microbiology
fastq report bacteria virulome resistome genotyping phylogenomics public-health denovo-assembly variant-calling
Created 2015-01-08
354 commits to master branch, last one 4 years ago
single-cell-genetics
cellsnp-lite single-cell-genetics
11
128
apache-2.0
8
Efficient genotyping bi-allelic SNPs on single cells
genotyping single-cell genetic-variants
Created 2020-07-31
236 commits to master branch, last one 3 months ago
single-cell-genetics
cellSNP single-cell-genetics
11
74
apache-2.0
6
Pileup biallelic SNPs from single-cell and bulk RNA-seq data
rna-seq genotyping single-cell genetic-variants
Created 2018-08-22
62 commits to master branch, last one 3 years ago
iprada
Circle-Map iprada
20
62
mit
6
A method for circular DNA detection based on probabilistic mapping of ultrashort reads
ngs ecdna eccdna circrna circrnas microdna genotyping circular-dna circrna-prediction structural-variation
Created 2017-03-22
365 commits to master branch, last one 2 years ago