7 results found Sort:

chhylp123
hifiasm chhylp123
87
540
mit
29
Hifiasm: a haplotype-resolved assembler for accurate Hifi reads
pacbio genomics hifi-read bioinformatics denovo-assembly
Created 2019-05-09
631 commits to master branch, last one 23 days ago
lh3
miniasm lh3
70
307
mit
29
Ultrafast de novo assembly for long noisy reads (though having no consensus step)
genomics bioinformatics denovo-assembly
Created 2015-11-05
174 commits to master branch, last one 5 years ago
tseemann
nullarbor tseemann
37
136
gpl-2.0
21
:floppy_disk: :page_with_curl: "Reads to report" for public health and clinical microbiology
fastq report bacteria virulome resistome genotyping phylogenomics public-health denovo-assembly variant-calling
Created 2015-01-08
354 commits to master branch, last one 4 years ago
bcgsc
RNA-Bloom bcgsc
7
96
other
11
:hibiscus: reference-free transcriptome assembly for short and long reads
rna-seq bulk-rna-seq denovo-assembly pacbio-sequencing bioinformatics-tool nanopore-sequencing single-cell-rna-seq
Created 2018-06-30
1,879 commits to master branch, last one 9 months ago
lh3
fermi-lite lh3
23
72
mit
11
Standalone C library for assembling Illumina short reads in small regions
genomics bioinformatics denovo-assembly
Created 2016-07-18
58 commits to master branch, last one about a year ago
lvrcek
GNNome-assembly lvrcek
10
70
mit
3
Learning to untangle genome assembly with graph neural networks.
denovo-assembly genome-assembly graph-algorithms graph-neural-networks
Created 2020-12-04
374 commits to master branch, last one 2 years ago
nf-core
bacass nf-core
41
60
mit
150
Simple bacterial assembly and annotation pipeline
denovo nf-core assembly nanopore nextflow pipeline workflow denovo-assembly genome-assembly hybrid-assembly bacterial-genomes nanopore-sequencing
Created 2019-01-31
633 commits to master branch, last one 4 months ago