8 results found Sort:

chhylp123
hifiasm chhylp123
88
561
mit
30
Hifiasm: a haplotype-resolved assembler for accurate Hifi reads
pacbio genomics hifi-read bioinformatics denovo-assembly
Created 2019-05-09
639 commits to master branch, last one 5 days ago
lh3
miniasm lh3
70
309
mit
29
Ultrafast de novo assembly for long noisy reads (though having no consensus step)
genomics bioinformatics denovo-assembly
Created 2015-11-05
174 commits to master branch, last one 5 years ago
tseemann
nullarbor tseemann
37
136
gpl-2.0
21
:floppy_disk: :page_with_curl: "Reads to report" for public health and clinical microbiology
fastq report bacteria virulome resistome genotyping phylogenomics public-health denovo-assembly variant-calling
Created 2015-01-08
354 commits to master branch, last one 4 years ago
bcgsc
RNA-Bloom bcgsc
7
98
other
11
:hibiscus: reference-free transcriptome assembly for short and long reads
rna-seq bulk-rna-seq denovo-assembly pacbio-sequencing bioinformatics-tool nanopore-sequencing single-cell-rna-seq
Created 2018-06-30
1,879 commits to master branch, last one 10 months ago
lh3
fermi-lite lh3
23
72
mit
11
Standalone C library for assembling Illumina short reads in small regions
genomics bioinformatics denovo-assembly
Created 2016-07-18
58 commits to master branch, last one 2 years ago
lvrcek
GNNome-assembly lvrcek
11
71
mit
3
Learning to untangle genome assembly with graph neural networks.
denovo-assembly genome-assembly graph-algorithms graph-neural-networks
Created 2020-12-04
376 commits to master branch, last one about a month ago
nf-core
bacass nf-core
42
63
mit
151
Simple bacterial assembly and annotation pipeline
denovo nf-core assembly nanopore nextflow pipeline workflow denovo-assembly genome-assembly hybrid-assembly bacterial-genomes nanopore-sequencing
Created 2019-01-31
726 commits to master branch, last one about a month ago
denisbeslic
denovopipeline denisbeslic
10
36
unknown
2
Pipeline for de novo peptide sequencing (Novor, DeepNovo, SMSNet, PointNovo, Casanovo) and assembly with ALPS.
pytorch pipeline tensorflow denovo-assembly machine-learning mass-spectrometry peptide-identification
Created 2021-07-27
63 commits to master branch, last one 10 months ago