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SPAdes Genome Assembler
Created
2016-06-01
15,130 commits to main branch, last one 19 days ago
Ultra-fast and memory-efficient (meta-)genome assembler
Created
2014-09-25
693 commits to master branch, last one 2 years ago
Signal-level algorithms for MinION data
Created
2014-12-17
1,479 commits to master branch, last one about a year ago
Tools for fast and flexible genome assembly scaffolding and improvement
Created
2020-02-25
253 commits to master branch, last one 2 years ago
Fast and accurate de novo assembler for long reads
Created
2019-01-09
111 commits to master branch, last one 10 months ago
Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets
Created
2015-11-09
455 commits to master branch, last one 7 months ago
LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also included in this package.
Created
2017-05-18
267 commits to master branch, last one 6 days ago
Viral genomics analysis pipelines
Created
2014-09-25
3,233 commits to master branch, last one 6 months ago
RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag
Created
2018-02-01
138 commits to master branch, last one 3 years ago
Redundans is a pipeline that assists an assembly of heterozygous/polymorphic genomes.
Created
2015-04-07
582 commits to master branch, last one about a year ago
MitoZ: A toolkit for assembly, annotation, and visualization of animal mitochondrial genomes
Created
2018-11-18
395 commits to master branch, last one 4 months ago
A bioinformatic toolkit to align genome assemblies into pangenome graphs
Created
2020-06-28
1,710 commits to master branch, last one 10 days ago
Compacted and colored de Bruijn graph construction and querying
Created
2019-11-20
604 commits to main branch, last one 2 months ago
Repeat-aware polishing genomes assembled using HiFi long reads
Created
2023-03-01
70 commits to main branch, last one 4 months ago
Long-reads Gap-free Chromosome-scale Assembler
Created
2020-04-01
30 commits to master branch, last one 2 years ago
Detailed bioinformatics scripts and methods used in the NAM genome paper.
Created
2019-12-02
294 commits to master branch, last one 2 months ago
Learning to untangle genome assembly with graph neural networks.
Created
2020-12-04
376 commits to master branch, last one 4 months ago
Simple bacterial assembly and annotation pipeline
Created
2019-01-31
726 commits to master branch, last one 4 months ago
A program for assessing the T2T genome continuity
Created
2023-10-24
196 commits to main branch, last one 26 days ago
A tool to raise the quality of viral genomes assembled from short-read metagenomes via resolving and joining of contigs fragmented during de novo assembly.
Created
2021-03-10
177 commits to main branch, last one 7 months ago
A novel genome assembly pipeline based on deep learning
Created
2022-03-16
324 commits to main branch, last one 3 months ago
Genome scaffolding based on HiC data in heterozygous and high ploidy genomes
Created
2017-11-06
347 commits to main branch, last one 2 months ago
Multi-platform genome assembly pipeline for Illumina, Nanopore and PacBio reads
Created
2019-08-06
477 commits to master branch, last one 6 months ago
Identification of errors in draft genome assemblies with single-base pair resolution for quality assessment and improvement
Created
2022-03-30
384 commits to main branch, last one 2 months ago
⛓ Correct misassemblies using linked AND long reads
Created
2017-07-22
227 commits to master branch, last one about a year ago
Transformer-based sequence correction method for genome assembly polishing
Created
2023-12-11
2 commits to r0.1.0 branch, last one about a year ago
BLEND is a mechanism that can efficiently find fuzzy seed matches between sequences to significantly improve the performance and accuracy while reducing the memory space usage of two important applica...
Created
2021-12-12
35 commits to master branch, last one about a year ago
Linear-time de novo Long Read Assembler
Created
2021-09-28
258 commits to main branch, last one 2 months ago
A pipeline for high-quality bacterial genome construction using ONT sequencing
Created
2021-01-15
53 commits to main branch, last one 2 years ago
C-Phasing/CPhasing: Phasing and scaffolding polyploid genomes based on Pore-C, HiFi-C/CiFi or Hi-C.
Created
2022-07-07
400 commits to main branch, last one a day ago