4 results found Sort:

biocorecrg
master_of_pores biocorecrg
16
89
mit
9
Nextflow pipeline for analysis of direct RNA Nanopore reads
docker nextflow singularity nextflow-pipeline nanopore-sequencing nanopore-analysis-pipeline
Created 2019-10-10
308 commits to v3.0 branch, last one 15 days ago
CMU-SAFARI
RawHash CMU-SAFARI
5
42
gpl-3.0
8
RawHash can accurately and efficiently map raw nanopore signals to reference genomes of varying sizes (e.g., from viral to a human genomes) in real-time without basecalling. Described by Firtina et al...
rawhash seeding nanopore raw-signal hash-tables read-mapping segmentation contamination nanopore-data bioinformatics nanopore-reads event-detection genome-analysis nanopore-minion nanopore-sequencing relative-abundances nanopore-analysis-pipeline raw-nanopore-signal-analysis
Created 2023-01-20
43 commits to main branch, last one 17 days ago
gaolabtools
scNanoGPS gaolabtools
2
38
other
4
Single cell Nanopore sequencing data for Genotype and Phenotype
isoforms single-cell cell-barcode umi-curation demultiplexing gene-expression rna-seq-pipeline long-read-sequencing nanopore-analysis-pipeline single-nucleotide-variation
Created 2022-09-13
34 commits to v1.1 branch, last one 22 days ago
BeatsonLab-MicrobialGenomics
micropipe BeatsonLab-MicrobialGenomics
9
38
gpl-3.0
9
A pipeline for high-quality bacterial genome construction using ONT sequencing
genome-assembly oxford-nanopore microbial-genomics long-read-sequencing bioinformatics-pipeline nanopore-analysis-pipeline
Created 2021-01-15
53 commits to main branch, last one 2 years ago