Statistics for topic bioinformatics-pipeline

RepositoryStats tracks 641,716 Github repositories, of these 48 are tagged with the bioinformatics-pipeline topic. The most common primary language for repositories using this topic is Python (23).

Stargazers over time for topic bioinformatics-pipeline

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Most starred repositories for topic bioinformatics-pipeline (view more)

scipipe
scipipe scipipe
72
1.1k
mit
36
Robust, flexible and resource-efficient pipelines using Go and the commandline
go fbp golang scipipe dataflow pipeline workflow bioinformatics cheminformatics workflow-engine scientific-workflows bioinformatics-pipeline
Created 2015-03-07
986 commits to master branch, last one 9 months ago
grailbio
reflow grailbio
52
967
apache-2.0
44
A language and runtime for distributed, incremental data processing in the cloud
aws golang runtime language data-science cloud-computing analysis-pipeline scientific-computing bioinformatics-pipeline
Created 2017-10-20
1,136 commits to master branch, last one about a year ago
bacalhau-project
bacalhau bacalhau-project
98
786
apache-2.0
27
Community-driven, simple, yet powerful framework for fast, cost-effective distributed Compute over Data.
iot p2p ai-art insulators ai-pipeline distributed data-science data-analysis decentralized gene-sequencing batch-processing data-engineering video-processing logging-framework ai-data-collection bioinformatics-pipeline decentralized-computing orchestration-framework
Created 2021-11-05
4,748 commits to main branch, last one 11 hours ago
sanger-pathogens
Roary sanger-pathogens
190
342
other
27
Rapid large-scale prokaryote pan genome analysis
genomics pathogen research sequencing global-health bioinformatics infectious-diseases bioinformatics-pipeline next-generation-sequencing
Created 2013-04-18
930 commits to master branch, last one 3 years ago
saketkc
pysradb saketkc
62
326
bsd-3-clause
11
Package for fetching metadata and downloading data from SRA/ENA/GEO
ena sra ncbi-sra sratoolkit bioinformatics ncbi-sra-archive bioinformatics-pipeline
Created 2018-11-29
662 commits to develop branch, last one 2 months ago
r3fang
SnapATAC r3fang
131
317
gpl-3.0
14
Analysis Pipeline for Single Cell ATAC-seq
sequencing epigenetics single-cell-analysis single-cell-atac-seq bioinformatics-pipeline machine-learning-algorithms
Created 2019-02-19
228 commits to master branch, last one 3 years ago

Trending repositories for topic bioinformatics-pipeline (view more)

Last 3 days (new repositories)
no newly created repositories trending in the last 3 days
Last 3 days (absolute gain)
no repositories trending in the last 3 days
Last 3 days (relative gain)
no repositories trending in the last 3 days
Last week (new repositories)
no newly created repositories trending in the last week
Last week (absolute gain)
stjude-rust-labs
stjude-rust-labs/sprocket

A bioinformatics workflow engine built on top of the Workflow Description Language (WDL).

69 (+2)
apache-2.0
Last week (relative gain)
stjude-rust-labs
stjude-rust-labs/sprocket

A bioinformatics workflow engine built on top of the Workflow Description Language (WDL).

69 (+3%)
apache-2.0
Last month (new repositories)
no newly created repositories trending in the last month
Last month (absolute gain)
stjude-rust-labs
stjude-rust-labs/sprocket

A bioinformatics workflow engine built on top of the Workflow Description Language (WDL).

69 (+17)
apache-2.0
bacalhau-project
bacalhau-project/bacalhau

Community-driven, simple, yet powerful framework for fast, cost-effective distributed Compute over Data.

786 (+17)
apache-2.0
hillerlab
hillerlab/TOGA

TOGA (Tool to infer Orthologs from Genome Alignments): implements a novel paradigm to infer orthologous genes. TOGA integrates gene annotation, inferring orthologs and classifying genes as intact or l...

177 (+4)
mit
GregorySchwartz
GregorySchwartz/too-many-cells

Cluster single cells and analyze cell clade relationships with colorful visualizations.

110 (+3)
gpl-3.0
sanger-pathogens
sanger-pathogens/Roary

Rapid large-scale prokaryote pan genome analysis

342 (+3)
Last month (relative gain)
stjude-rust-labs
stjude-rust-labs/sprocket

A bioinformatics workflow engine built on top of the Workflow Description Language (WDL).

69 (+33%)
apache-2.0
GregorySchwartz
GregorySchwartz/too-many-cells

Cluster single cells and analyze cell clade relationships with colorful visualizations.

110 (+3%)
gpl-3.0
hillerlab
hillerlab/TOGA

TOGA (Tool to infer Orthologs from Genome Alignments): implements a novel paradigm to infer orthologous genes. TOGA integrates gene annotation, inferring orthologs and classifying genes as intact or l...

177 (+2%)
mit
bacalhau-project
bacalhau-project/bacalhau

Community-driven, simple, yet powerful framework for fast, cost-effective distributed Compute over Data.

786 (+2%)
apache-2.0
nickjcroucher
nickjcroucher/gubbins

Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins

185 (+1%)
gpl-2.0
Last 12-months (new repositories)
no newly created repositories trending in the last 12 months
Last 12-months (absolute gain)
bacalhau-project
bacalhau-project/bacalhau

Community-driven, simple, yet powerful framework for fast, cost-effective distributed Compute over Data.

786 (+183)
apache-2.0
stjude-rust-labs
stjude-rust-labs/sprocket

A bioinformatics workflow engine built on top of the Workflow Description Language (WDL).

69 (+60)
apache-2.0
sanger-pathogens
sanger-pathogens/Roary

Rapid large-scale prokaryote pan genome analysis

342 (+51)
hillerlab
hillerlab/TOGA

TOGA (Tool to infer Orthologs from Genome Alignments): implements a novel paradigm to infer orthologous genes. TOGA integrates gene annotation, inferring orthologs and classifying genes as intact or l...

177 (+47)
mit
scipipe
scipipe/scipipe

Robust, flexible and resource-efficient pipelines using Go and the commandline

1,095 (+42)
mit
Last 12-months (relative gain)
stjude-rust-labs
stjude-rust-labs/sprocket

A bioinformatics workflow engine built on top of the Workflow Description Language (WDL).

69 (+667%)
apache-2.0
hillerlab
hillerlab/make_lastz_chains

Portable solution to generate genome alignment chains using lastz

55 (+53%)
mit
akcorut
akcorut/kGWASflow

kGWASflow is a Snakemake workflow for performing k-mers-based GWAS.

38 (+52%)
mit
hillerlab
hillerlab/TOGA

TOGA (Tool to infer Orthologs from Genome Alignments): implements a novel paradigm to infer orthologous genes. TOGA integrates gene annotation, inferring orthologs and classifying genes as intact or l...

177 (+36%)
mit
bacalhau-project
bacalhau-project/bacalhau

Community-driven, simple, yet powerful framework for fast, cost-effective distributed Compute over Data.

786 (+30%)
apache-2.0