7 results found Sort:

zhanghao-njmu
SCP zhanghao-njmu
66
312
gpl-3.0
7
An end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.
scanpy seurat anndata scrna-seq shiny-app shinyapps scatac-seq shiny-apps single-cell scrna-pipeline seurat-objects single-cell-omics scrna-seq-analysis single-cell-rna-seq single-cell-analysis single-cell-atac-seq single-cell-genomics single-cell-pipeline single-cell-sequencing
Created 2022-03-30
308 commits to main branch, last one 6 months ago
r3fang
SnapATAC r3fang
125
294
gpl-3.0
14
Analysis Pipeline for Single Cell ATAC-seq
sequencing epigenetics single-cell-analysis single-cell-atac-seq bioinformatics-pipeline machine-learning-algorithms
Created 2019-02-19
228 commits to master branch, last one 2 years ago
genecell
single-cell-papers-with-code genecell
61
261
unknown
12
Papers with code for single cell related papers
scrna-seq single-cell paper-with-code single-cell-omics scrna-seq-analysis reproducible-science single-cell-atac-seq reproducible-research
Created 2020-07-27
32 commits to master branch, last one 10 months ago
yanwu2014
swne yanwu2014
20
102
bsd-3-clause
5
Similarity Weighted Nonnegative Embedding (SWNE), a method for visualizing high dimensional datasets
bioinformatics data-visualization single-cell-rna-seq statistical-methods single-cell-analysis single-cell-atac-seq single-cell-genomics dimensionality-reduction nonnegative-matrix-factorization
Created 2018-01-03
270 commits to master branch, last one 10 months ago
parashardhapola
scarf parashardhapola
12
90
bsd-3-clause
5
Toolkit for highly memory efficient analysis of single-cell RNA-Seq, scATAC-Seq and CITE-Seq data. Analyze atlas scale datasets with millions of cells on laptop.
tsne umap big-data cite-seq genomics scrna-seq clustering multiomics pseudotime scatac-seq gene-modules bioinformatics graph-analytics memory-efficient dimension-reduction single-cell-rna-seq single-cell-atac-seq single-cell-genomics scalable-data-analysis differential-expression
Created 2020-05-07
989 commits to master branch, last one 9 days ago
genecell
COSG genecell
6
36
bsd-3-clause
1
Accurate and fast cell marker gene identification with COSG
single-cell single-cell-rna-seq single-cell-analysis single-cell-atac-seq spatial-transcriptomics
Created 2021-04-13
21 commits to main branch, last one about a year ago
quadbio
scMultiome_analysis_vignette quadbio
9
34
unknown
2
Tutorial of single-cell RNA-ATAC multiomic sequencing data analysis
tutorial bioinformatics single-cell-rna-seq single-cell-analysis single-cell-atac-seq single-cell-multiomics
Created 2022-04-24
11 commits to main branch, last one about a month ago