9 results found Sort:

zhanghao-njmu
SCP zhanghao-njmu
100
464
gpl-3.0
8
An end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.
scanpy seurat anndata scrna-seq shiny-app shinyapps scatac-seq shiny-apps single-cell scrna-pipeline seurat-objects single-cell-omics scrna-seq-analysis single-cell-rna-seq single-cell-analysis single-cell-atac-seq single-cell-genomics single-cell-pipeline single-cell-sequencing
Created 2022-03-30
308 commits to main branch, last one about a year ago
genecell
single-cell-papers-with-code genecell
71
281
unknown
12
Papers with code for single cell related papers
scrna-seq single-cell paper-with-code single-cell-omics scrna-seq-analysis single-cell-rna-seq reproducible-science single-cell-atac-seq reproducible-research
Created 2020-07-27
32 commits to master branch, last one about a year ago
dpeerlab
Palantir dpeerlab
53
241
gpl-2.0
10
Single cell trajectory detection
scrna-seq markov-chain diffusion-maps differentiation manifold-learning scrna-seq-analysis single-cell-genomics cell-fate-transitions trajectory-generation dimensionality-reduction
Created 2017-11-22
294 commits to master branch, last one 20 days ago
wheaton5
souporcell wheaton5
47
175
mit
10
Clustering scRNAseq by genotypes
genomics scrnaseq scrna-seq bioinformatics scrna-seq-analysis computational-biology
Created 2019-03-16
228 commits to master branch, last one 6 months ago
juexinwang
scGNN juexinwang
40
143
mit
3
scGNN (single cell graph neural networks) for single cell clustering and imputation using graph neural networks
single-cell scrna-seq-analysis graph-neural-network
Created 2019-11-16
984 commits to master branch, last one 3 years ago
KrishnaswamyLab
MELD KrishnaswamyLab
9
105
other
5
Quantifying experimental perturbations at single cell resolution
machine-learning scrna-seq-analysis
Created 2017-11-28
437 commits to main branch, last one about a year ago
AntonioDeFalco
SCEVAN AntonioDeFalco
25
98
gpl-3.0
4
R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the malignant cells. It also infers the copy number profile of mali...
scrna-seq aneuploidy copynumber single-cell scrna-pipeline clonal-analysis tumor-evolution clonal-evolution microenvironment scrna-seq-analysis tumor-heterogeneity tumor-classification copy-number-variation subclonal-deconvolution subclone-identification
Created 2021-07-05
238 commits to main branch, last one 11 days ago
GfellerLab
SuperCell GfellerLab
12
75
gpl-3.0
4
Coarse-graining of large single-cell RNA-seq data into metacells
r-package scrna-seq-data coarse-graining scrna-seq-analysis
Created 2020-06-23
236 commits to master branch, last one 8 months ago
BaderLab
scClustViz BaderLab
9
50
mit
12
Explore and share your scRNAseq clustering results
r ui shiny scrnaseq scrna-seq single-cell scrna-seq-analysis clustering-evaluation differential-expression
Created 2017-04-06
266 commits to master branch, last one about a year ago