12 results found Sort:

scverse
scanpy scverse
621
2.1k
bsd-3-clause
48
Single-cell analysis in Python. Scales to >100M cells.
python scanpy anndata scverse data-science bioinformatics visualize-data transcriptomics machine-learning
Created 2017-01-29
3,550 commits to main branch, last one a day ago
scverse
anndata scverse
161
613
bsd-3-clause
12
Annotated data.
scanpy anndata scverse data-science bioinformatics transcriptomics machine-learning
Created 2017-08-11
1,491 commits to main branch, last one a day ago
zhanghao-njmu
SCP zhanghao-njmu
100
469
gpl-3.0
8
An end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.
scanpy seurat anndata scrna-seq shiny-app shinyapps scatac-seq shiny-apps single-cell scrna-pipeline seurat-objects single-cell-omics scrna-seq-analysis single-cell-rna-seq single-cell-analysis single-cell-atac-seq single-cell-genomics single-cell-pipeline single-cell-sequencing
Created 2022-03-30
308 commits to main branch, last one about a year ago
scverse
muon scverse
31
230
bsd-3-clause
12
muon is a multimodal omics Python framework
muon mudata scanpy anndata scverse cite-seq scrna-seq scatac-seq multi-omics multimodal-data multimodal-omics-analysis
Created 2020-02-03
589 commits to main branch, last one 29 days ago
scverse
rapids_singlecell scverse
26
185
mit
8
Rapids_singlecell: A GPU-accelerated tool for scRNA analysis. Offers seamless scverse compatibility for efficient single-cell data processing and analysis.
gpu anndata scverse single-cell bioinformatics
Created 2021-05-05
522 commits to main branch, last one 5 days ago
basilkhuder
Seurat-to-RNA-Velocity basilkhuder
27
138
unknown
6
A guide to using a Seurat object in conjunction with RNA Velocity
scvelo seurat anndata bustools kallisto velocyto kb-python rna-velocity integrating-loom kallisto-bustools
Created 2020-01-08
99 commits to master branch, last one 3 years ago
scverse
mudata scverse
19
91
bsd-3-clause
6
Multimodal Data (.h5mu) implementation for Python
muon mudata anndata scverse genomics multi-omics data-analysis multimodal-omics-analysis
Created 2021-08-04
619 commits to main branch, last one 11 days ago
fanglu0411
sgs fanglu0411
19
91
unknown
8
SGS, is a user-friendly, collaborative and versatile browser for visualizing single-cell and spatial multiomics data.
sgs zarr schic scrna mudata scatac sceqtl anndata scmethylc multimodal single-cell spatial-omics visualization genome-browser
Created 2024-07-01
72 commits to main branch, last one about a month ago
lilab-bcb
cirrocumulus lilab-bcb
17
79
bsd-3-clause
7
Bring your single-cell data to life
10x webgl scanpy seurat anndata spatial scrna-seq smartseq2 single-cell visualization bioinformatics transcriptomics data-visualization
Created 2019-10-04
2,110 commits to main branch, last one 6 months ago
scverse
anndataR scverse
11
72
other
10
AnnData interoperability in R
h5ad anndata
Created 2023-04-26
382 commits to main branch, last one 13 days ago
theislab
DRVI theislab
3
38
bsd-3-clause
1
Unsupervised Deep Disentangled Representation of Single-Cell Omics
python anndata integration single-cell bioinformatics disentanglement transcriptomics
Created 2024-10-24
78 commits to main branch, last one about a month ago
complextissue
pytximport complextissue
2
35
gpl-3.0
1
Feature-rich Python implementation of the tximport package for gene count estimation.
rna deseq2 python anndata rna-seq scverse tximport bioinformatics
Created 2024-05-30
123 commits to main branch, last one 4 days ago