scverse / scanpy

Single-cell analysis in Python. Scales to >100M cells.

Date Created 2017-01-29 (8 years ago)

Commits 3,544 (last one 3 days ago)

Stargazers 2,045 (3 this week)

Watchers 47 (0 this week)

Forks 616

License bsd-3-clause

Ranking

RepositoryStats indexes 631,351 repositories, of these scverse/scanpy is ranked #26,236 (96th percentile) for total stargazers, and #44,313 for total watchers. Github reports the primary language for this repository as Python, for repositories using this language it is ranked #4,141/128,766.

scverse/scanpy is also tagged with popular topics, for these it's ranked: python (#1,676/23380), machine-learning (#793/8391), data-science (#263/2217), bioinformatics (#9/844)

Other Information

scverse/scanpy has 74 open pull requests on Github, 1,403 pull requests have been merged over the lifetime of the repository.

Github issues are enabled, there are 496 open issues and 1,324 closed issues.

There have been 89 releases, the latest one was published on 2025-02-14 (about a month ago) with the name 1.11.0.

Homepage URL: https://scanpy.readthedocs.io

All Topics

python scanpy anndata scverse data-science bioinformatics visualize-data transcriptomics machine-learning

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Github watchers over time, collection started in '23

Recent Commit History

489 commits on the default branch (main) since jan '22

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The primary language is Python but there's also others...

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updated: 2025-03-24 @ 05:33pm, id: 80342493 / R_kgDOBMnt3Q