8 results found Sort:

scverse
scanpy scverse
581
1.8k
bsd-3-clause
52
Single-cell analysis in Python. Scales to >1M cells.
python scanpy anndata scverse data-science bioinformatics visualize-data transcriptomics machine-learning
Created 2017-01-29
3,397 commits to main branch, last one a day ago
scverse
anndata scverse
149
521
bsd-3-clause
14
Annotated data.
scanpy anndata scverse data-science bioinformatics transcriptomics machine-learning
Created 2017-08-11
1,311 commits to main branch, last one 2 days ago
zhanghao-njmu
SCP zhanghao-njmu
68
318
gpl-3.0
8
An end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.
scanpy seurat anndata scrna-seq shiny-app shinyapps scatac-seq shiny-apps single-cell scrna-pipeline seurat-objects single-cell-omics scrna-seq-analysis single-cell-rna-seq single-cell-analysis single-cell-atac-seq single-cell-genomics single-cell-pipeline single-cell-sequencing
Created 2022-03-30
308 commits to main branch, last one 7 months ago
scverse
muon scverse
28
202
bsd-3-clause
14
muon is a multimodal omics Python framework
muon mudata scanpy anndata scverse cite-seq scrna-seq scatac-seq multi-omics multimodal-data multimodal-omics-analysis
Created 2020-02-03
540 commits to master branch, last one 2 months ago
interactivereport
cellxgene_VIP interactivereport
43
124
mit
6
Enables cellxgene to generate violin, stacked violin, stacked bar, heatmap, volcano, embedding, dot, track, density, 2D density, sankey and dual-gene plot in high-resolution SVG/PNG format. It also pe...
svg scanpy seurat cellxgene scrna-seq cellxgene-vip visualization publication-quality-plots
Created 2020-05-06
694 commits to master branch, last one 8 days ago
theislab
anndata2ri theislab
16
116
gpl-3.0
7
Convert between AnnData and SingleCellExperiment
rpy2 scanpy jupyter single-cell bioconductor
Created 2019-02-20
174 commits to main branch, last one 4 days ago
theislab
ncem theislab
13
100
bsd-3-clause
6
Learning cell communication from spatial graphs of cells
glm gnn cvae scanpy squidpy tensorflow cell-cell-interaction encoder-decoder-model cell-cell-communication
Created 2021-05-04
412 commits to main branch, last one about a year ago
lilab-bcb
cirrocumulus lilab-bcb
12
65
bsd-3-clause
7
Bring your single-cell data to life
10x webgl scanpy seurat anndata spatial scrna-seq smartseq2 single-cell visualization bioinformatics transcriptomics data-visualization
Created 2019-10-04
2,105 commits to main branch, last one 9 months ago