Search Results - RepositoryStats

scanpy scverse

599

1.9k

bsd-3-clause

51

Single-cell analysis in Python. Scales to >1M cells.

python scanpy anndata scverse data-science bioinformatics visualize-data transcriptomics machine-learning

Created 2017-01-29

3,473 commits to main branch, last one a day ago

scvi-tools scverse

350

1.2k

bsd-3-clause

26

Deep probabilistic analysis of single-cell and spatial omics data

scverse cite-seq scrna-seq deep-learning human-cell-atlas variational-bayes single-cell-rna-seq single-cell-genomics deep-generative-model variational-autoencoder

Created 2017-09-06

4,093 commits to main branch, last one 7 days ago

anndata scverse

153

576

bsd-3-clause

14

Annotated data.

scanpy anndata scverse data-science bioinformatics transcriptomics machine-learning

Created 2017-08-11

1,399 commits to main branch, last one 21 hours ago

ehrapy theislab

20

225

apache-2.0

5

Electronic Health Record Analysis with Python.

ehr scverse electronic-health-record electronic-medical-record

Created 2021-06-11

1,758 commits to main branch, last one 17 hours ago

muon scverse

30

217

bsd-3-clause

14

muon is a multimodal omics Python framework

muon mudata scanpy anndata scverse cite-seq scrna-seq scatac-seq multi-omics multimodal-data multimodal-omics-analysis

Created 2020-02-03

586 commits to main branch, last one 7 days ago

rapids_singlecell scverse

21

148

mit

9

Rapids_singlecell: A GPU-accelerated tool for scRNA analysis. Offers seamless scverse compatibility for efficient single-cell data processing and analysis.

gpu anndata scverse single-cell bioinformatics

Created 2021-05-05

481 commits to main branch, last one 23 hours ago

pertpy scverse

21

140

mit

4

Perturbation Analysis in the scverse ecosystem.

scverse single-cell perturbation

Created 2021-06-23

972 commits to main branch, last one 11 days ago

infercnvpy icbi-lab

27

137

bsd-3-clause

4

Infer copy number variation (CNV) from scRNA-seq data. Plays nicely with Scanpy.

cnv scverse single-cell

Created 2021-01-26

188 commits to main branch, last one 3 months ago

mudata scverse

17

77

bsd-3-clause

6

Multimodal Data (.h5mu) implementation for Python

muon mudata anndata scverse genomics multi-omics data-analysis multimodal-omics-analysis

Created 2021-08-04

597 commits to main branch, last one 20 days ago

scvi-tutorials scverse

25

46

bsd-3-clause

7

Notebooks used in scvi-tools tutorials

scverse tutorial scvi-tools

Created 2020-09-13

730 commits to main branch, last one 7 days ago

scdownstream nf-core

12

38

mit

180

A single cell transcriptomics pipeline for QC, integration and making the data presentable

scverse clustering integration single-cell quality-control dimensionality-reduction

Created 2024-06-11

425 commits to dev branch, last one 8 days ago