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R toolkit for single cell genomics
Created
2015-05-20
8,541 commits to master branch, last one 21 days ago
Deep probabilistic analysis of single-cell and spatial omics data
Created
2017-09-06
3,993 commits to main branch, last one 2 days ago
Spatial Single Cell Analysis in Python
Created
2020-08-21
626 commits to main branch, last one 4 days ago
Reference mapping for single-cell genomics
Created
2019-08-12
1,174 commits to master branch, last one 3 months ago
An end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.
Created
2022-03-30
308 commits to main branch, last one 6 months ago
CellRank: dynamics from multi-view single-cell data
Created
2020-03-12
2,276 commits to main branch, last one about a month ago
Community-provided extensions to Seurat
Created
2019-04-24
359 commits to master branch, last one about a month ago
Single cell perturbation prediction
Created
2018-11-28
422 commits to master branch, last one 8 months ago
Single cell trajectory detection
Created
2017-11-22
264 commits to master branch, last one a day ago
Single-cell epigenomics analysis tools
Created
2021-12-04
439 commits to main branch, last one 4 days ago
R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.
Created
2021-09-29
2,374 commits to master branch, last one 3 months ago
Interfaces for HDF5-based Single Cell File Formats
Created
2019-12-16
176 commits to master branch, last one 6 months ago
Generate high quality, publication ready visualizations for single cell transcriptomics data.
Created
2021-12-21
706 commits to main branch, last one 3 months ago
Dataset distribution for Seurat
Created
2019-05-29
97 commits to master branch, last one 6 months ago
Similarity Weighted Nonnegative Embedding (SWNE), a method for visualizing high dimensional datasets
Created
2018-01-03
270 commits to master branch, last one 10 months ago
A Shiny web app for mapping datasets using Seurat v4
Created
2020-09-16
873 commits to master branch, last one 6 months ago
Toolkit for highly memory efficient analysis of single-cell RNA-Seq, scATAC-Seq and CITE-Seq data. Analyze atlas scale datasets with millions of cells on laptop.
Created
2020-05-07
989 commits to master branch, last one 9 days ago
The Compositional Perturbation Autoencoder (CPA) is a deep generative framework to learn effects of perturbations at the single-cell level. CPA performs OOD predictions of unseen combinations of drugs...
Created
2021-10-15
339 commits to main branch, last one 2 months ago
Convert Seurat objects to 10x Genomics Loupe files.
Created
2023-08-23
19 commits to main branch, last one 2 months ago
Semi-supervised adversarial neural networks for classification of single cell transcriptomics data
Created
2019-07-29
34 commits to master branch, last one 5 months ago
Online single-cell data integration through projecting heterogeneous datasets into a common cell-embedding space
Created
2021-03-09
78 commits to main branch, last one about a month ago
Rails/Docker application for the Broad Institute's single cell RNA-seq data portal
Created
2016-03-17
11,938 commits to development branch, last one a day ago
Predict RNA velocity through deep learning
Created
2023-01-23
583 commits to main branch, last one 5 months ago
A deep learning architecture for robust inference and accurate prediction of cellular dynamics
Created
2022-01-03
94 commits to main branch, last one 9 months ago
𝒫robabilistic modeling of RNA velocity ⬱
Created
2022-09-07
231 commits to main branch, last one 8 months ago