21 results found Sort:

lmcinnes
umap lmcinnes
811
7.5k
bsd-3-clause
127
Uniform Manifold Approximation and Projection
umap visualization machine-learning dimensionality-reduction topological-data-analysis
Created 2017-07-02
1,865 commits to master branch, last one 22 days ago
PAIR-code
umap-js PAIR-code
32
384
apache-2.0
11
JavaScript implementation of UMAP
umap javascript dimensionality-reduction
Created 2019-02-20
115 commits to main branch, last one 6 months ago
jlmelville
uwot jlmelville
31
326
gpl-3.0
21
An R package implementing the UMAP dimensionality reduction method.
r umap dimensionality-reduction
Created 2018-06-12
978 commits to master branch, last one 3 days ago
Renumics
renumics-rag Renumics
41
176
mit
3
Visualization for a Retrieval-Augmented Generation (RAG) Assistant 🤖❤️📚
llm rag umap openai langchain streamlit huggingface visualization machine-learning retrieval-augmented large-language-models retrieval-augmented-generation
Created 2024-01-23
130 commits to main branch, last one 4 days ago
stemangiola
tidyseurat stemangiola
12
159
unknown
9
Seurat meets tidyverse. The best of both worlds.
pca sct tsne umap dplyr purrr tidyr seurat tibble ggplot2 tidyverse single-cell transcripts normalization single-cell-rna-seq
Created 2020-08-23
414 commits to master branch, last one 5 months ago
timsainb
ParametricUMAP_paper timsainb
15
149
mit
8
Parametric UMAP embeddings for representation and semisupervised learning. From the paper "Parametric UMAP: learning embeddings with deep neural networks for representation and semi-supervised learnin...
umap machine-learning representation-learning semisupervised-learning dimensionality-reduction
Created 2020-05-29
24 commits to master branch, last one 4 years ago
genular
pandora genular
21
135
other
11
PANDORA :computer:
tsne umap pandora biomarkers clustering microbiome data-mining data-science clinical-data bioinformatics drug-discovery systems-biology transcriptomics data-integration machine-learning data-visualization predictive-analytics genomic-data-analysis unsupervised-machine-learning
Created 2018-07-03
1,546 commits to master branch, last one about a month ago
tkonopka
umap tkonopka
16
132
other
8
Uniform Manifold Approximation and Projection - R package
umap dimensionality-reduction
Created 2018-04-16
102 commits to master branch, last one 7 months ago
dillondaudert
UMAP.jl dillondaudert
17
130
mit
8
Uniform Manifold Approximation and Projection (UMAP) implementation in Julia
umap julia visualization machine-learning dimensionality-reduction topological-data-analysis
Created 2018-09-13
241 commits to master branch, last one 10 months ago
rezakj
iCellR rezakj
19
121
unknown
13
Single (i) Cell R package (iCellR) is an interactive R package to work with high-throughput single cell sequencing technologies (i.e scRNA-seq, scVDJ-seq, scATAC-seq, CITE-Seq and Spatial Transcriptom...
3d umap icellr dropout cite-seq scrna-seq scvdj-seq clustering imputation pseudotime 10xgenomics normalization diffusion-maps intractive-graph batch-normalization clustering-algorithm singel-cell-sequencing cell-type-classification
Created 2018-12-11
84 commits to master branch, last one 5 months ago
Dragonmasterx87
Interactive-3D-Plotting-in-Seurat-3.0.0 Dragonmasterx87
29
118
gpl-3.0
7
This repository contains R code, with which you can create 3D UMAP and tSNE plots of Seurat analyzed scRNAseq data
umap 3dpca 3dtsne 3dumap seurat plotting scrnaseq scrnaseq-data seurat-objects rna-seq-analysis
Created 2019-05-14
65 commits to master branch, last one about a year ago
saehm
DruidJS saehm
10
115
unknown
7
A JavaScript Library for Dimensionality Reduction
lle mds pca ltsa umap t-sne isomap matrix fastmap clustering javascript-library unsupervised-learning dimensionality-reduction
Created 2019-08-27
136 commits to master branch, last one about a year ago
hyungkwonko
umato hyungkwonko
11
108
mit
7
Uniform Manifold Approximation with Two-phase Optimization (IEEE VIS 2022 short)
umap umato visualization dimensionality-reduction topological-data-analysis
Created 2020-06-20
270 commits to master branch, last one 18 days ago
parashardhapola
scarf parashardhapola
12
98
bsd-3-clause
5
Toolkit for highly memory efficient analysis of single-cell RNA-Seq, scATAC-Seq and CITE-Seq data. Analyze atlas scale datasets with millions of cells on laptop.
tsne umap big-data cite-seq genomics scrna-seq clustering multiomics pseudotime scatac-seq gene-modules bioinformatics graph-analytics memory-efficient dimension-reduction single-cell-rna-seq single-cell-atac-seq single-cell-genomics scalable-data-analysis differential-expression
Created 2020-05-07
1,024 commits to master branch, last one 4 days ago
VenoMKO
RealEditor VenoMKO
31
89
unknown
16
Tera Online 32-bit and 64-bit client package(*.gpk, *.gmp, *.upk, *.umap, *.u) editor/viewer
gpk upk tera umap gpk-mods 3d-models tera-mods gmp-export gpk-editor tera-online
Created 2020-07-13
599 commits to master branch, last one 2 years ago
xieguigang
sciBASIC xieguigang
35
73
gpl-3.0
17
sciBASIC# is a kind of dialect language which is derive from the native VB.NET language, and written for the data scientist.
cnn hqx hdf5 umap t-sne netcdf manifold graphquery data-mining data-science machine-learning microsoft-visualbasic network-visualization
Created 2016-01-05
15,913 commits to master branch, last one 20 hours ago
jlmelville
smallvis jlmelville
10
68
unknown
7
R package for dimensionality reduction of small datasets
r umap t-sne largevis dimensionality-reduction
Created 2017-11-29
531 commits to master branch, last one 3 months ago
YontiLevin
Embeddings2Image YontiLevin
11
66
mit
2
create "Karpathy's style" 2d images out of your image embeddings
tsne umap python visualization
Created 2017-03-16
62 commits to master branch, last one 4 years ago
thiswillbeyourgithub
AnnA_Anki_neuronal_Appendix thiswillbeyourgithub
1
63
gpl-3.0
4
Using machine learning on your anki collection to enhance the scheduling via semantic clustering and semantic similarity
ai nlp pca anki bert umap sbert kmeans latent doc2vec embedding scheduler sementics clustering flashcards neighbourhood machinelearning sentence-embeddings
Created 2021-03-24
2,111 commits to main branch, last one 2 months ago
YoujiaZhang
SigmaCCS YoujiaZhang
2
57
mit
0
(communications chemistry 2023) Highly accurate and large-scale collision cross section prediction with graph neural network for compound identification
ccs gcn gnn umap deep-learning machine-learning
Created 2021-04-06
93 commits to main branch, last one 3 years ago
davisidarta
dbMAP davisidarta
4
47
gpl-2.0
2
A fast, accurate, and modularized dimensionality reduction approach based on diffusion harmonics and graph layouts. Escalates to millions of samples on a personal laptop. Adds high-dimensional big dat...
umap denoising single-cell graph-layout visualization high-dimensional machine-learning diffusion-process nearest-neighbors dimensionality-reduction
Created 2019-12-13
467 commits to master branch, last one 3 years ago