6 results found Sort:

Teichlab
celltypist Teichlab
46
318
mit
8
A tool for semi-automatic cell type classification
python scrna-seq single-cell label-transfer machine-learning cell-type-classification
Created 2021-05-19
743 commits to main branch, last one 14 days ago
rezakj
iCellR rezakj
19
121
unknown
13
Single (i) Cell R package (iCellR) is an interactive R package to work with high-throughput single cell sequencing technologies (i.e scRNA-seq, scVDJ-seq, scATAC-seq, CITE-Seq and Spatial Transcriptom...
3d umap icellr dropout cite-seq scrna-seq scvdj-seq clustering imputation pseudotime 10xgenomics normalization diffusion-maps intractive-graph batch-normalization clustering-algorithm singel-cell-sequencing cell-type-classification
Created 2018-12-11
84 commits to master branch, last one 5 months ago
nsalomonis
altanalyze nsalomonis
30
100
apache-2.0
16
AltAnalyze is a multi-functional and easy-to-use software package for automated single-cell and bulk gene and splicing analyses. Easy-to-use precompiled graphical user-interface versions available fro...
python pagerank bam-files cell-cycle clustering rna-seq-data fastq-anaysis scrna-seq-data network-analysis pathway-analysis command-line-tool graphical-interface alternative-splicing marker-gene-analysis single-cell-splicing splicing-visualization bioinformatics-pipeline splicing-quantification cell-type-classification louvain-community-detection
Created 2015-08-08
237 commits to master branch, last one 2 years ago
ZJUFanLab
scDeepSort ZJUFanLab
18
100
gpl-3.0
6
Cell-type Annotation for Single-cell Transcriptomics using Deep Learning with a Weighted Graph Neural Network
gnn scrna-seq annotation single-cell deep-learning reference-free transcriptomics graph-neural-network cell-type-classification
Created 2020-04-18
102 commits to master branch, last one 2 years ago
deweylab
CellO deweylab
13
65
mit
6
CellO: Gene expression-based hierarchical cell type classification using the Cell Ontology
rna-seq cell-type ontologies cell-biology bioinformatics machine-learning single-cell-rna-seq computational-biology cell-type-classification
Created 2019-04-05
177 commits to master branch, last one about a year ago
CahanLab
CellNet CahanLab
25
53
mit
8
CellNet: network biology applied to stem cell engineering
rna-seq cell-type-classification stem-cell-differentiation
Created 2015-01-07
111 commits to master branch, last one about a year ago