6 results found Sort:

kcleal
gw kcleal
7
287
mit
6
Genome browser and variant annotation
vcf bam-files cram-files genome-browser annotation-tool
Created 2022-07-07
941 commits to master branch, last one 11 days ago
davetang
learning_bam_file davetang
23
111
mit
8
Learning the Sequence Alignment/Map format
bam sam samtools bam-files bam-flags
Created 2016-04-15
94 commits to main branch, last one 9 months ago
nsalomonis
altanalyze nsalomonis
30
100
apache-2.0
16
AltAnalyze is a multi-functional and easy-to-use software package for automated single-cell and bulk gene and splicing analyses. Easy-to-use precompiled graphical user-interface versions available fro...
python pagerank bam-files cell-cycle clustering rna-seq-data fastq-anaysis scrna-seq-data network-analysis pathway-analysis command-line-tool graphical-interface alternative-splicing marker-gene-analysis single-cell-splicing splicing-visualization bioinformatics-pipeline splicing-quantification cell-type-classification louvain-community-detection
Created 2015-08-08
237 commits to master branch, last one 2 years ago
BioJulia
BioAlignments.jl BioJulia
24
61
mit
15
Sequence alignment tools
biology biojulia bam-files sam-files dna-sequences bioinformatics sequence-analysis sequence-alignment smith-waterman-alignment high-throughput-sequencing
Created 2017-06-15
180 commits to master branch, last one 4 months ago
IARCbioinfo
needlestack IARCbioinfo
15
50
gpl-3.0
11
Multi-sample somatic variant caller
ngs docker nextflow pipeline samtools variants bam-files regression somatic-mutations negative-binomial-regression
Created 2015-06-16
981 commits to master branch, last one 5 years ago
jonas-fuchs
BAMdash jonas-fuchs
2
39
gpl-3.0
2
create a interactive coverage plot dashboard from bam files and add gb, vcf and bed tracks
plotly bam-files bed-files dashboard vcf-files interactive genbank-files coverage-report
Created 2023-10-05
51 commits to master branch, last one 4 months ago