19 results found Sort:

implus
PytorchInsight implus
123
860
unknown
23
a pytorch lib with state-of-the-art architectures, pretrained models and real-time updated results
bam cnn sge cbam gcnet senet sknet tricks pytorch detection cnn-tricks shufflenetv2 weight-decay classification attention-models state-of-the-art pretrained-models training-shufflenetv2 convolutional-networks weight-normalization-family
Created 2019-05-17
35 commits to master branch, last one 3 years ago
samtools
htslib samtools
446
813
other
62
C library for high-throughput sequencing data formats
bam bcf ngs sam vcf cram htslib bioinformatics
Created 2012-05-15
3,329 commits to develop branch, last one a day ago
biod
sambamba biod
105
565
gpl-2.0
27
Tools for working with SAM/BAM data
bam sam bioinformatics
Created 2012-04-28
1,156 commits to master branch, last one about a year ago
samtools
htsjdk samtools
243
285
unknown
50
A Java API for high-throughput sequencing data (HTS) formats.
bam dna ngs sam vcf cram java fasta genomics java-api sequencing
Created 2014-04-29
2,848 commits to master branch, last one 22 days ago
bioSyntax
bioSyntax bioSyntax
30
255
gpl-3.0
17
Syntax highlighting for computational biology
bam pdb vcf vim less fasta gedit sublime-text bioinformatics syntax-highlighting computational-biology
Created 2017-12-05
188 commits to master branch, last one 3 years ago
mbhall88
rasusa mbhall88
17
212
mit
6
Randomly subsample sequencing reads or alignments
bam rust fasta fastq random coverage alignment downsample subsampling bioinformatics genome-analysis
Created 2019-09-26
240 commits to main branch, last one 2 months ago
dashbuilder
dashbuilder dashbuilder
121
191
apache-2.0
29
Dashboard composition tooling based on the Uberfire framework
bam gwt kpi java metric dashboard monitoring dashbuilder elasticsearch
Created 2014-03-19
1,275 commits to master branch, last one 3 years ago
broadinstitute
viral-ngs broadinstitute
67
190
other
30
Viral genomics analysis pipelines
bam fastq viral genome genomics illumina viral-ngs genome-assembly variant-calling genome-sequencing variant-annotations
Created 2014-09-25
3,233 commits to master branch, last one 2 months ago
kacos2000
Win10 kacos2000
33
178
mpl-2.0
22
Win 10/11 related research
bam wdi xml dfir win10 win11 events amcache windows eventlog forensic jumplist keywords objectid timeline yourphone sticky-notes keyword-lists notifications mediaplayer-library
Created 2018-06-14
666 commits to master branch, last one 11 months ago
Genetalks
gtz Genetalks
39
171
other
17
A high performance and compression ratio compressor for genomic data, powered by GTXLab of Genetalks.
bam gtx sam gene fastq pacbio compress nanopore compression compression-rate fastq-compression genomic-data-compression
Created 2016-11-11
824 commits to master branch, last one 2 years ago
divonlan
genozip divonlan
12
158
other
1
A modern compressor for genomic files (FASTQ, SAM/BAM/CRAM, VCF, FASTA, GFF/GTF/GVF, 23andMe...), up to 5x better than gzip and faster too
bam bwa gvf sam vcf cram gzip bgzip fasta fastq 23andme genomics samtools compression
Created 2019-12-15
3,261 commits to master branch, last one about a month ago
davetang
learning_bam_file davetang
22
110
mit
8
Learning the Sequence Alignment/Map format
bam sam samtools bam-files bam-flags
Created 2016-04-15
94 commits to main branch, last one 8 months ago
Griffan
VerifyBamID Griffan
15
94
unknown
8
VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.
bam cram genetics qc-analysis biostatistics contamination dna-sequences bioinformatics
Created 2016-02-15
203 commits to master branch, last one 6 months ago
chrovis
cljam chrovis
12
90
apache-2.0
11
A DNA Sequence Alignment/Map (SAM) library for Clojure
bam bcf bed gff sam vcf wig 2bit cram fasta fastq bigwig clojure genomics bioinformatics
Created 2014-01-08
1,631 commits to master branch, last one 3 days ago
mdshw5
simplesam mdshw5
8
62
mit
7
Simple pure Python SAM parser and objects for working with SAM records
bam sam python genomics bioinformatics
Created 2015-05-20
108 commits to master branch, last one 2 years ago
telatin
bamtocov telatin
6
60
mit
3
🏔 coverage extraction from BAM/CRAM files, supporting targets 📊  
bam bed gff ngs coverage alignment bioinformatics
Created 2021-02-01
202 commits to main branch, last one 2 years ago
alignoth
alignoth alignoth
1
56
mit
3
Creating alignment plots from bam files
bam igv rust vega plots alignment
Created 2022-04-05
309 commits to main branch, last one 2 days ago
sbslee
fuc sbslee
5
48
mit
1
Frequently used commands in bioinformatics
api bam bed cli gff gtf maf sam vcf cram fasta fastq visualization bioinformatics
Created 2021-03-26
952 commits to main branch, last one 5 months ago
showteeth
scfetch showteeth
4
34
gpl-3.0
2
Access and Format Single-cell RNA-seq Datasets from Public Resources
bam geo sra fastq zenodo cellxgene panglaodb human-cell-atlas ucsc-cell-browser single-cell-rna-seq format-conversion-tool
Created 2023-07-12
82 commits to main branch, last one 6 months ago