8 results found Sort:

NBISweden
AGAT NBISweden
57
474
gpl-3.0
45
Another Gtf/Gff Analysis Toolkit https://nbisweden.github.io/AGAT/
gff gtf agat toolkit gff-format perl-scripts standardisation
Created 2019-11-19
555 commits to master branch, last one 12 days ago
moshi4
pyGenomeViz moshi4
23
297
mit
3
A genome visualization python package for comparative genomics
gff gff3 python genbank synteny genomics matplotlib microbiology visualization bioinformatics microbial-genomics comparative-genomics genomics-visualization
Created 2022-05-20
438 commits to main branch, last one 5 days ago
wurmlab
flo wurmlab
28
96
unknown
16
Same species annotation lift over pipeline.
gff liftover bioinformatics gene-prediction
Created 2015-05-06
51 commits to master branch, last one about a year ago
NAL-i5K
GFF3toolkit NAL-i5K
27
96
other
13
Python programs for processing GFF3 files
gff gff3 gff3-format bioinformatics
Created 2015-11-09
547 commits to master branch, last one 9 months ago
chrovis
cljam chrovis
12
90
apache-2.0
11
A DNA Sequence Alignment/Map (SAM) library for Clojure
bam bcf bed gff sam vcf wig 2bit cram fasta fastq bigwig clojure genomics bioinformatics
Created 2014-01-08
1,635 commits to master branch, last one about a month ago
wrf
genomeGTFtools wrf
27
69
unknown
5
convert various features into a GFF-like file for use in genome browsers
gff jbrowse genomics visualization genome-browsers genome-annotation
Created 2015-04-02
214 commits to master branch, last one about a year ago
telatin
bamtocov telatin
6
60
mit
3
🏔 coverage extraction from BAM/CRAM files, supporting targets 📊  
bam bed gff ngs coverage alignment bioinformatics
Created 2021-02-01
202 commits to main branch, last one 2 years ago
sbslee
fuc sbslee
5
52
mit
2
Frequently used commands in bioinformatics
api bam bed cli gff gtf maf sam vcf cram fasta fastq visualization bioinformatics
Created 2021-03-26
952 commits to main branch, last one 6 months ago