7 results found Sort:

NBISweden
AGAT NBISweden
57
473
gpl-3.0
45
Another Gtf/Gff Analysis Toolkit https://nbisweden.github.io/AGAT/
gff gtf agat toolkit gff-format perl-scripts standardisation
Created 2019-11-19
555 commits to master branch, last one 8 days ago
tariqdaouda
pyGeno tariqdaouda
50
313
apache-2.0
25
Personalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPs
bed gtf vcf snps cancer genome biology ensembl genomes medical genomics medicine csv-parser proteomics bioinformatics cancer-genomes genome-browser cancer-genomics genome-annotation genome-sequencing
Created 2014-09-26
532 commits to bloody branch, last one 4 years ago
igordot
genomics igordot
54
201
unknown
7
A collection of scripts and notes related to genomics and bioinformatics
dna gtf vcf fast5 fasta fastq science genomics illumina nanopore workflow sequencing bioinformatics
Created 2015-12-22
118 commits to master branch, last one about a month ago
sagnikbanerjee15
Finder sagnikbanerjee15
14
58
mit
5
A fully automated gene annotator from RNA-Seq expression data
gtf finder rna-seq gene-models transcripts predict-genes bioinformatics gene-annotations genome-annotation protein-sequences changepoint-detection bioinformatics-pipeline gene-annotation-pipeline
Created 2021-01-08
189 commits to master branch, last one about a year ago
sbslee
fuc sbslee
5
52
mit
2
Frequently used commands in bioinformatics
api bam bed cli gff gtf maf sam vcf cram fasta fastq visualization bioinformatics
Created 2021-03-26
952 commits to main branch, last one 6 months ago
junjunlab
BioSeqUtils junjunlab
2
30
other
2
Extract Sequence from Genome According to Annotation File
gtf hic genome atac-seq chip-seq merip-seq transcript coverage-plot
Created 2023-03-03
80 commits to master branch, last one about a month ago
alejandrogzi
gtfsort alejandrogzi
3
28
mit
1
a lexicographically-based GTF/GFF sorter
gtf sorting algorithms bioinformatics sorting-algorithms
Created 2023-08-24
115 commits to master branch, last one 4 months ago