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An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)
Created
2017-10-31
465 commits to master branch, last one 3 months ago
SPAdes Genome Assembler
Created
2016-06-01
15,130 commits to main branch, last one 6 days ago
Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling
Created
2021-03-30
603 commits to main branch, last one 17 days ago
A collection of scripts and notes related to genomics and bioinformatics
Created
2015-12-22
120 commits to master branch, last one about a month ago
Amplicon sequencing analysis workflow using DADA2 and QIIME2
Created
2018-09-26
2,541 commits to master branch, last one 4 months ago
Viral genomics analysis pipelines
Created
2014-09-25
3,233 commits to master branch, last one 5 months ago
Aligns short reads using dynamic seed size with strobemers
Created
2021-05-23
1,743 commits to main branch, last one 10 days ago
Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data
Created
2022-02-18
2,145 commits to master branch, last one 4 days ago
Assembly and intrahost/low-frequency variant calling for viral samples
Created
2020-03-30
2,788 commits to master branch, last one about a year ago
Comprehensive TE insertion identification with WGS/WES data from multiple sequencing technics
Created
2018-07-12
148 commits to master branch, last one 26 days ago
Command line utility for manipulating Illumina-generated FASTQ files.
Created
2018-03-12
458 commits to master branch, last one 17 days ago
An accurate and ultra-fast hybrid genome assembler
Created
2019-03-04
50 commits to master branch, last one 4 years ago
ClairS - a deep-learning method for long-read somatic small variant calling
Created
2021-07-29
763 commits to main branch, last one 18 days ago
Analysis pipelines for genomic sequencing data
Created
2016-08-24
174 commits to main branch, last one about a month ago
Allelic decomposition and exact genotyping of highly polymorphic and structurally variant genes
Created
2017-12-14
417 commits to master branch, last one 4 months ago
ClairS-TO - a deep-learning method for tumor-only somatic variant calling
Created
2023-11-07
181 commits to main branch, last one 7 days ago
Multi-platform genome assembly pipeline for Illumina, Nanopore and PacBio reads
Created
2019-08-06
477 commits to master branch, last one 6 months ago
Parse Illumina sample sheets with Python
Created
2017-12-02
69 commits to main branch, last one 2 years ago
Demultiplexing pipeline for sequencing data
Created
2020-03-05
1,193 commits to master branch, last one 26 days ago
A Nextflow workflow for QC, evaluation, and profiling of metagenomic samples using short- and long-read technologies
Created
2022-10-12
177 commits to main branch, last one about a year ago
Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.
Created
2023-02-26
203 commits to master branch, last one 24 days ago
Fast sequencing data quality metrics
Created
2023-03-13
1,318 commits to develop branch, last one about a month ago