22 results found Sort:

334
2.0k
mit
51
An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)
Created 2017-10-31
465 commits to master branch, last one 3 months ago
145
799
other
32
SPAdes Genome Assembler
Created 2016-06-01
15,130 commits to main branch, last one 5 days ago
31
267
unknown
11
Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling
Created 2021-03-30
603 commits to main branch, last one 16 days ago
55
206
unknown
7
A collection of scripts and notes related to genomics and bioinformatics
Created 2015-12-22
120 commits to master branch, last one about a month ago
127
194
mit
150
Amplicon sequencing analysis workflow using DADA2 and QIIME2
Created 2018-09-26
2,541 commits to master branch, last one 4 months ago
Viral genomics analysis pipelines
Created 2014-09-25
3,233 commits to master branch, last one 5 months ago
Aligns short reads using dynamic seed size with strobemers
Created 2021-05-23
1,743 commits to main branch, last one 9 days ago
Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data
Created 2022-02-18
2,145 commits to master branch, last one 3 days ago
117
133
mit
105
Assembly and intrahost/low-frequency variant calling for viral samples
Created 2020-03-30
2,788 commits to master branch, last one about a year ago
23
107
other
8
Comprehensive TE insertion identification with WGS/WES data from multiple sequencing technics
Created 2018-07-12
148 commits to master branch, last one 26 days ago
Command line utility for manipulating Illumina-generated FASTQ files.
Created 2018-03-12
458 commits to master branch, last one 16 days ago
14
83
agpl-3.0
7
An accurate and ultra-fast hybrid genome assembler
Created 2019-03-04
50 commits to master branch, last one 4 years ago
8
81
bsd-3-clause
6
ClairS - a deep-learning method for long-read somatic small variant calling
Created 2021-07-29
763 commits to main branch, last one 17 days ago
28
66
mit
8
Analysis pipelines for genomic sequencing data
Created 2016-08-24
174 commits to main branch, last one about a month ago
21
62
other
4
Allelic decomposition and exact genotyping of highly polymorphic and structurally variant genes
Created 2017-12-14
417 commits to master branch, last one 4 months ago
4
59
bsd-3-clause
3
ClairS-TO - a deep-learning method for tumor-only somatic variant calling
Created 2023-11-07
181 commits to main branch, last one 6 days ago
11
58
gpl-3.0
3
Multi-platform genome assembly pipeline for Illumina, Nanopore and PacBio reads
Created 2019-08-06
477 commits to master branch, last one 6 months ago
Parse Illumina sample sheets with Python
Created 2017-12-02
69 commits to main branch, last one 2 years ago
Demultiplexing pipeline for sequencing data
Created 2020-03-05
1,193 commits to master branch, last one 25 days ago
A Nextflow workflow for QC, evaluation, and profiling of metagenomic samples using short- and long-read technologies
Created 2022-10-12
177 commits to main branch, last one about a year ago
10
36
gpl-3.0
6
Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.
Created 2023-02-26
203 commits to master branch, last one 23 days ago
Fast sequencing data quality metrics
Created 2023-03-13
1,318 commits to develop branch, last one about a month ago