15 results found Sort:

google
deepconsensus google
36
233
bsd-3-clause
17
DeepConsensus uses gap-aware sequence transformers to correct errors in Pacific Biosciences (PacBio) Circular Consensus Sequencing (CCS) data.
transformers deep-learning bioinformatics long-read-sequencing
Created 2021-08-04
192 commits to r1.2 branch, last one about a year ago
nf-core
mag nf-core
115
226
mit
160
Assembly and binning of metagenomes
binning nf-core assembly nanopore nextflow pipeline workflow annotation metagenomes metagenomics bioinformatics nanopore-sequencing long-read-sequencing
Created 2018-05-22
2,527 commits to master branch, last one about a month ago
nf-core
viralrecon nf-core
115
129
mit
106
Assembly and intrahost/low-frequency variant calling for viral samples
ont artic viral virus covid19 nf-core amplicon assembly covid-19 illumina nanopore nextflow pipeline workflow sars-cov-2 metagenomics oxford-nanopore variant-calling long-read-sequencing
Created 2020-03-30
2,788 commits to master branch, last one about a year ago
HKU-BAL
ClairS HKU-BAL
8
78
bsd-3-clause
6
ClairS - a deep-learning method for long-read somatic small variant calling
ont snvs indels pacbio phasing genomics illumina nanopore haplotypes long-reads short-reads deep-learning bioinformatics somatic-variants somatic-mutations long-read-sequencing
Created 2021-07-29
762 commits to main branch, last one 2 months ago
katerinakazantseva
strainy katerinakazantseva
5
71
other
5
Graph-based assembly phasing
hifi assembly nanopore long-reads sequencing metagenomics long-read-sequencing metagenomic-analysis
Created 2021-12-29
517 commits to main branch, last one 2 months ago
ksahlin
ultra ksahlin
10
60
unknown
4
Long-read splice alignment with high accuracy
alignment strobemers bioinformatics long-read-sequencing
Created 2019-08-20
698 commits to master branch, last one 4 months ago
HKU-BAL
ClairS-TO HKU-BAL
4
58
bsd-3-clause
3
ClairS-TO - a deep-learning method for tumor-only somatic variant calling
ont snvs pacbio tumors genomics illumina nanopore variants long-reads tumor-only deep-learning bioinformatics variant-calling somatic-variants somatic-mutations long-read-sequencing
Created 2023-11-07
163 commits to main branch, last one about a month ago
HudsonAlpha
fmlrc2 HudsonAlpha
5
45
apache-2.0
6
This repository has no description...
bwt rust genomics error-correction long-read-sequencing
Created 2020-06-15
115 commits to master branch, last one about a year ago
gaolabtools
scNanoGPS gaolabtools
4
44
other
5
Single cell Nanopore sequencing data for Genotype and Phenotype
isoforms single-cell cell-barcode umi-curation demultiplexing gene-expression rna-seq-pipeline long-read-sequencing nanopore-analysis-pipeline single-nucleotide-variation
Created 2022-09-13
41 commits to v1.1 branch, last one 16 days ago
JensUweUlrich
Taxor JensUweUlrich
2
43
bsd-3-clause
2
Fast and space-efficient taxonomic classification of long reads
kmer bioinf refseq syncmer taxonomy long-read microbiome xor-filter em-algorithm metagenomics bioinformatics pseudo-alignment taxonomic-profiling long-read-sequencing interleaved-xor-filter taxonomic-classification
Created 2022-01-05
103 commits to main branch, last one 3 months ago
sheynkman-lab
Long-Read-Proteogenomics sheynkman-lab
17
42
mit
7
A workflow for enhanced protein isoform detection through integration of long-read RNA-seq and mass spectrometry-based proteomics.
isoforms nextflow pipeline proteomics long-read-sequencing
Created 2020-10-28
402 commits to main branch, last one 2 years ago
Serka-M
mmlong2 Serka-M
5
41
gpl-3.0
1
Bioinformatics pipeline for recovery and analysis of metagenome-assembled genomes
pacbio nanopore microbiome metagenomics bioinformatics microbial-genomics long-read-sequencing metagenome-assembled-genomes
Created 2022-11-29
219 commits to main branch, last one about a month ago
BeatsonLab-MicrobialGenomics
micropipe BeatsonLab-MicrobialGenomics
9
38
gpl-3.0
9
A pipeline for high-quality bacterial genome construction using ONT sequencing
genome-assembly oxford-nanopore microbial-genomics long-read-sequencing bioinformatics-pipeline nanopore-analysis-pipeline
Created 2021-01-15
53 commits to main branch, last one 2 years ago
bcgsc
goldrush bcgsc
2
37
gpl-3.0
10
Linear-time de novo Long Read Assembler
bioinformatics genome-assembly bioinformatics-tool long-read-sequencing
Created 2021-09-28
258 commits to main branch, last one 17 hours ago
xinehc
melon xinehc
2
34
mit
1
Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes
metagenomics taxonomic-profiling long-read-sequencing
Created 2023-09-19
47 commits to master branch, last one 5 days ago