Search Results - RepositoryStats

37

218

bsd-3-clause

17

DeepConsensus uses gap-aware sequence transformers to correct errors in Pacific Biosciences (PacBio) Circular Consensus Sequencing (CCS) data.

transformers deep-learning bioinformatics long-read-sequencing

Created 2021-08-04

192 commits to r1.2 branch, last one about a year ago

mag nf-core

102

190

mit

157

Assembly and binning of metagenomes

binning nf-core assembly nanopore nextflow pipeline workflow annotation metagenomes metagenomics bioinformatics nanopore-sequencing long-read-sequencing

Created 2018-05-22

2,180 commits to master branch, last one 18 days ago

viralrecon nf-core

103

111

mit

101

Assembly and intrahost/low-frequency variant calling for viral samples

ont artic viral virus covid19 nf-core amplicon assembly covid-19 illumina nanopore nextflow pipeline workflow sars-cov-2 metagenomics oxford-nanopore variant-calling long-read-sequencing

Created 2020-03-30

2,788 commits to master branch, last one about a year ago

ultra ksahlin

10

59

unknown

4

Long-read splice alignment with high accuracy

alignment strobemers bioinformatics long-read-sequencing

Created 2019-08-20

695 commits to master branch, last one 11 months ago

ClairS HKU-BAL

5

58

bsd-3-clause

5

ClairS - a deep-learning method for long-read somatic small variant calling

ont snvs indels pacbio phasing genomics illumina nanopore haplotypes long-reads short-reads deep-learning bioinformatics somatic-variants somatic-mutations long-read-sequencing

Created 2021-07-29

691 commits to main branch, last one a day ago

strainy katerinakazantseva

4

41

other

5

Graph-based assembly phasing

hifi assembly nanopore long-reads sequencing metagenomics long-read-sequencing metagenomic-analysis

Created 2021-12-29

470 commits to main branch, last one about a month ago

fmlrc2 HudsonAlpha

5

41

apache-2.0

6

This repository has no description...

bwt rust genomics error-correction long-read-sequencing

Created 2020-06-15

115 commits to master branch, last one about a year ago

micropipe BeatsonLab-MicrobialGenomics

9

38

gpl-3.0

9

A pipeline for high-quality bacterial genome construction using ONT sequencing

genome-assembly oxford-nanopore microbial-genomics long-read-sequencing bioinformatics-pipeline nanopore-analysis-pipeline

Created 2021-01-15

53 commits to main branch, last one about a year ago

ClairS-TO HKU-BAL

3

37

bsd-3-clause

2

ClairS-TO - a deep-learning method for tumor-only somatic variant calling

ont snvs pacbio tumors genomics illumina nanopore variants long-reads tumor-only deep-learning bioinformatics variant-calling somatic-variants somatic-mutations long-read-sequencing

Created 2023-11-07

110 commits to main branch, last one about a month ago

scNanoGPS gaolabtools

1

34

other

4

Single cell Nanopore sequencing data for Genotype and Phenotype

isoforms single-cell cell-barcode umi-curation demultiplexing gene-expression rna-seq-pipeline long-read-sequencing nanopore-analysis-pipeline single-nucleotide-variation

Created 2022-09-13

32 commits to v1.1 branch, last one 28 days ago

mmlong2 Serka-M

3

33

gpl-3.0

1

Bioinformatics pipeline for recovery and analysis of metagenome-assembled genomes

pacbio nanopore microbiome metagenomics bioinformatics microbial-genomics long-read-sequencing metagenome-assembled-genomes

Created 2022-11-29

216 commits to main branch, last one 8 days ago