22 results found Sort:
- Filter by Primary Language:
- Python (11)
- C++ (4)
- Perl (2)
- R (2)
- Cython (1)
- Shell (1)
- Go (1)
- +
Structural variation caller using third generation sequencing
Created
2015-10-25
339 commits to master branch, last one about a month ago
DELLY2: Structural variant discovery by integrated paired-end and split-read analysis
Created
2013-11-15
1,400 commits to main branch, last one 2 days ago
Structural variant and indel caller for mapped sequencing data
This repository has been archived
(exclude archived)
Created
2013-05-30
2,631 commits to master branch, last one 5 years ago
Structural variant toolkit for VCFs
Created
2018-04-13
1,337 commits to develop branch, last one 7 days ago
Long read based human genomic structural variation detection with cuteSV
Created
2018-09-11
294 commits to master branch, last one 4 months ago
structural variant calling and genotyping with existing tools, but, smoothly.
Created
2018-01-27
174 commits to master branch, last one 3 months ago
Fast and accurate gene fusion detection from RNA-Seq data
Created
2017-10-23
694 commits to master branch, last one about a year ago
A structural variation pipeline for short-read sequencing
Created
2020-06-18
488 commits to main branch, last one 3 days ago
Graph realignment tools for structural variants
Created
2017-11-24
33 commits to master branch, last one about a year ago
Tools for processing and analyzing structural variants.
Created
2014-04-09
943 commits to master branch, last one 5 years ago
GraffiTE is a pipeline that finds polymorphic transposable elements in genome assemblies and/or long reads, and genotypes the discovered polymorphisms in read sets using genome-graphs.
Created
2022-03-09
448 commits to main branch, last one 22 days ago
Toolkit for calling structural variants using short or long reads
Created
2019-10-30
520 commits to master branch, last one 8 days ago
simuG: a general-purpose genome simulator
Created
2018-12-04
10 commits to master branch, last one about a month ago
This repository has no description...
Created
2019-04-07
215 commits to master branch, last one 4 months ago
Merging, Annotation, Validation, and Illustration of Structural variants
Created
2017-12-01
1,875 commits to master branch, last one about a year ago
An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.
Created
2018-03-12
232 commits to master branch, last one 4 months ago
Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data
Created
2017-05-12
124 commits to master branch, last one 24 days ago
MUM&Co is a simple bash script that uses Whole Genome Alignment information provided by MUMmer (only v4) to detect Structural Variation
Created
2019-05-17
97 commits to master branch, last one about a year ago
A Python package for pharmacogenomics (PGx) research
Created
2020-06-20
1,172 commits to master branch, last one 3 months ago
A method for circular DNA detection based on probabilistic mapping of ultrashort reads
Created
2017-03-22
365 commits to master branch, last one 2 years ago
Python package to annotate and visualize gene fusions.
Created
2016-10-03
283 commits to master branch, last one about a year ago
A computation framework for genome-wide detection of enhancer-hijacking events from chromatin interaction data in re-arranged genomes
Created
2021-02-09
99 commits to master branch, last one 11 months ago