24 results found Sort:

Structural variation caller using third generation sequencing
Created 2015-10-25
404 commits to master branch, last one 17 days ago
138
455
bsd-3-clause
35
DELLY2: Structural variant discovery by integrated paired-end and split-read analysis
Created 2013-11-15
1,414 commits to main branch, last one 15 days ago
152
418
gpl-3.0
41
Structural variant and indel caller for mapped sequencing data
This repository has been archived (exclude archived)
Created 2013-05-30
2,631 commits to master branch, last one 5 years ago
Structural variant toolkit for VCFs
Created 2018-04-13
1,436 commits to develop branch, last one a day ago
Long read based human genomic structural variation detection with cuteSV
Created 2018-09-11
299 commits to master branch, last one 14 days ago
21
241
apache-2.0
11
structural variant calling and genotyping with existing tools, but, smoothly.
Created 2018-01-27
174 commits to master branch, last one 7 months ago
51
231
other
13
Fast and accurate gene fusion detection from RNA-Seq data
Created 2017-10-23
694 commits to master branch, last one about a year ago
72
177
bsd-3-clause
14
A structural variation pipeline for short-read sequencing
Created 2020-06-18
528 commits to main branch, last one a day ago
28
156
other
18
Graph realignment tools for structural variants
Created 2017-11-24
33 commits to master branch, last one 2 years ago
54
150
mit
18
Tools for processing and analyzing structural variants.
Created 2014-04-09
943 commits to master branch, last one 5 years ago
7
148
other
4
GraffiTE is a pipeline that finds polymorphic transposable elements in genome assemblies and/or long reads, and genotypes the discovered polymorphisms in read sets using genome-graphs.
Created 2022-03-09
476 commits to main branch, last one a day ago
12
100
mit
3
Toolkit for calling structural variants using short or long reads
Created 2019-10-30
571 commits to master branch, last one 13 days ago
12
88
mit
3
simuG: a general-purpose genome simulator
Created 2018-12-04
10 commits to master branch, last one 6 months ago
This repository has no description...
Created 2019-04-07
215 commits to master branch, last one 8 months ago
14
74
gpl-3.0
13
Merging, Annotation, Validation, and Illustration of Structural variants
Created 2017-12-01
1,875 commits to master branch, last one about a year ago
19
70
unknown
8
An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.
Created 2018-03-12
232 commits to master branch, last one 8 months ago
8
67
other
10
Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data
Created 2017-05-12
124 commits to master branch, last one 4 months ago
14
66
mit
10
A Python package for pharmacogenomics (PGx) research
Created 2020-06-20
1,172 commits to master branch, last one 7 months ago
15
65
gpl-3.0
2
MUM&Co is a simple bash script that uses Whole Genome Alignment information provided by MUMmer (only v4) to detect Structural Variation
Created 2019-05-17
97 commits to master branch, last one about a year ago
Python package to annotate and visualize gene fusions.
Created 2016-10-03
301 commits to master branch, last one 4 months ago
A method for circular DNA detection based on probabilistic mapping of ultrashort reads
Created 2017-03-22
365 commits to master branch, last one 2 years ago
A computation framework for genome-wide detection of enhancer-hijacking events from chromatin interaction data in re-arranged genomes
Created 2021-02-09
99 commits to master branch, last one about a year ago
Structural variant discovery and genotyping from mapped PacBio HiFi data
Created 2024-02-21
24 commits to main branch, last one 13 days ago
Complex structural variant visualization for HiFi sequencing data
Created 2024-03-21
85 commits to main branch, last one 2 months ago