Search Results - RepositoryStats

159

745

gpl-3.0

39

🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment

10x rnaseq salmon rna-seq sailfish scrna-seq c-plus-plus single-cell quasi-mapping transcriptome bioinformatics quantification gene-expression selective-alignment single-cell-rna-seq rna-seq-quantification

Created 2015-03-19

1,907 commits to master branch, last one 3 months ago

NanoSim bcgsc

51

217

other

16

Nanopore sequence read simulator

genome simulator transcriptome oxford-nanopore nanopore-sequencing

Created 2015-11-05

343 commits to master branch, last one 6 months ago

scCATCH ZJUFanLab

36

205

gpl-3.0

4

Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data

seurat rna-seq sequencing single-cell cell-markers marker-genes transcriptome transcriptomics cluster-annotation

Created 2019-08-06

118 commits to master branch, last one about a year ago

TALON mortazavilab

29

131

mit

5

Technology agnostic long read analysis pipeline for transcriptomes

pacbio transcriptome oxford-nanopore transcript-quantification

Created 2018-04-03

744 commits to master branch, last one 5 months ago

get_homologues eead-csic-compbio

25

102

other

18

GET_HOMOLOGUES: a versatile software package for pan-genome analysis

fasta plants genbank pangene bacteria pangenome annotation clustering transcriptome

Created 2015-11-26

572 commits to master branch, last one 16 days ago

GeneTonic federicomarini

8

75

other

6

Enjoy your transcriptomic data and analysis responsibly - like sipping a cocktail

r gui shiny bioconductor rna-seq-data transcriptome user-friendly gene-expression transcriptomics data-exploration pathway-analysis rna-seq-analysis data-visualization bioconductor-package reproducible-research functional-enrichment-analysis

Created 2019-06-24

1,069 commits to devel branch, last one about a month ago

mavis bcgsc

13

72

gpl-3.0

14

Merging, Annotation, Validation, and Illustration of Structural variants

python genomics transcriptome visualization bioinformatics structural-variation

Created 2017-12-01

1,875 commits to master branch, last one 10 months ago

RATTLE comprna

9

56

gpl-3.0

8

Reference-free reconstruction and error correction of transcriptomes from Nanopore long-read sequencing

rna-seq genomics nanopore clustering transcriptome bioinformatics

Created 2018-07-13

203 commits to master branch, last one 4 months ago

pcaExplorer federicomarini

17

54

other

12

pcaExplorer - Interactive exploration of Principal Components of Samples and Genes in RNA-seq data

r shiny bioconductor rna-seq-data transcriptome user-friendly rna-seq-analysis principal-components reproducible-research

Created 2016-03-11

522 commits to devel branch, last one about a month ago

swan_vis mortazavilab

11

52

mit

4

A Python library to visualize and analyze long-read transcriptomes

pacbio long-read transcriptome bioinformatics pacbio-iso-seq oxford-nanopore

Created 2019-11-19

541 commits to master branch, last one 3 months ago