11 results found Sort:

COMBINE-lab
salmon COMBINE-lab
164
780
gpl-3.0
38
🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment
10x rnaseq salmon rna-seq sailfish scrna-seq c-plus-plus single-cell quasi-mapping transcriptome bioinformatics quantification gene-expression selective-alignment single-cell-rna-seq rna-seq-quantification
Created 2015-03-19
1,907 commits to master branch, last one 9 months ago
bcgsc
NanoSim bcgsc
58
247
other
18
Nanopore sequence read simulator
genome simulator transcriptome oxford-nanopore nanopore-sequencing
Created 2015-11-05
360 commits to master branch, last one about a month ago
ZJUFanLab
scCATCH ZJUFanLab
38
220
gpl-3.0
5
Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data
seurat rna-seq sequencing single-cell cell-markers marker-genes transcriptome transcriptomics cluster-annotation
Created 2019-08-06
118 commits to master branch, last one about a year ago
mortazavilab
TALON mortazavilab
30
137
mit
6
Technology agnostic long read analysis pipeline for transcriptomes
pacbio transcriptome oxford-nanopore transcript-quantification
Created 2018-04-03
744 commits to master branch, last one 11 months ago
eead-csic-compbio
get_homologues eead-csic-compbio
26
110
other
17
GET_HOMOLOGUES: a versatile software package for pan-genome analysis
fasta plants genbank pangene bacteria pangenome annotation clustering transcriptome
Created 2015-11-26
592 commits to master branch, last one about a month ago
federicomarini
GeneTonic federicomarini
8
76
other
6
Enjoy your transcriptomic data and analysis responsibly - like sipping a cocktail
r gui shiny bioconductor rna-seq-data transcriptome user-friendly gene-expression transcriptomics data-exploration pathway-analysis rna-seq-analysis data-visualization bioconductor-package reproducible-research functional-enrichment-analysis
Created 2019-06-24
1,099 commits to devel branch, last one 2 days ago
bcgsc
mavis bcgsc
14
74
gpl-3.0
14
Merging, Annotation, Validation, and Illustration of Structural variants
python genomics transcriptome visualization bioinformatics structural-variation
Created 2017-12-01
1,875 commits to master branch, last one about a year ago
mortazavilab
swan_vis mortazavilab
11
57
mit
4
A Python library to visualize and analyze long-read transcriptomes
pacbio long-read transcriptome bioinformatics pacbio-iso-seq oxford-nanopore
Created 2019-11-19
541 commits to master branch, last one 9 months ago
comprna
RATTLE comprna
10
57
gpl-3.0
9
Reference-free reconstruction and error correction of transcriptomes from Nanopore long-read sequencing
rna-seq genomics nanopore clustering transcriptome bioinformatics
Created 2018-07-13
203 commits to master branch, last one 10 months ago
federicomarini
pcaExplorer federicomarini
17
56
other
12
pcaExplorer - Interactive exploration of Principal Components of Samples and Genes in RNA-seq data
r shiny bioconductor rna-seq-data transcriptome user-friendly rna-seq-analysis principal-components reproducible-research
Created 2016-03-11
568 commits to devel branch, last one 2 days ago
ksahlin
isONclust ksahlin
8
50
gpl-3.0
5
De novo clustering of long transcript reads into genes
clustering transcriptome bioinformatics pacbio-iso-seq oxford-nanopore
Created 2018-10-26
90 commits to master branch, last one 3 years ago