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164

780

gpl-3.0

38

🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment

10x rnaseq salmon rna-seq sailfish scrna-seq c-plus-plus single-cell quasi-mapping transcriptome bioinformatics quantification gene-expression selective-alignment single-cell-rna-seq rna-seq-quantification

Created 2015-03-19

1,907 commits to master branch, last one 9 months ago

mixcr milaboratory

79

338

other

31

MiXCR is an ultimate software platform for analysis of Next-Generation Sequencing (NGS) data for immune profiling.

10x t-cell rep-seq rna-seq antibody immunology sequencing single-cell bioinformatics t-cell-receptor

Created 2015-03-30

3,995 commits to develop branch, last one 8 days ago

alevin-fry COMBINE-lab

15

175

bsd-3-clause

9

🐟 🔬🦀 alevin-fry is an efficient and flexible tool for processing single-cell sequencing data, currently focused on single-cell transcriptomics and feature barcoding.

10x rust rna-seq single-cell quantification transcriptomics single-cell-rna-seq

Created 2020-07-15

835 commits to master branch, last one a day ago

CITE-seq-Count Hoohm

43

79

mit

11

A tool that allows to get UMI counts from a single cell protein assay

10x citeseq dropseq single-cell

Created 2017-08-07

207 commits to master branch, last one 3 years ago

cirrocumulus lilab-bcb

16

76

bsd-3-clause

7

Bring your single-cell data to life

10x webgl scanpy seurat anndata spatial scrna-seq smartseq2 single-cell visualization bioinformatics transcriptomics data-visualization

Created 2019-10-04

2,110 commits to main branch, last one 3 months ago