5 results found Sort:

COMBINE-lab
salmon COMBINE-lab
166
796
gpl-3.0
37
🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment
10x rnaseq salmon rna-seq sailfish scrna-seq c-plus-plus single-cell quasi-mapping transcriptome bioinformatics quantification gene-expression selective-alignment single-cell-rna-seq rna-seq-quantification
Created 2015-03-19
1,907 commits to master branch, last one about a year ago
milaboratory
mixcr milaboratory
81
345
other
29
MiXCR is an ultimate software platform for analysis of Next-Generation Sequencing (NGS) data for immune profiling.
10x t-cell rep-seq rna-seq antibody immunology sequencing single-cell bioinformatics t-cell-receptor
Created 2015-03-30
4,001 commits to develop branch, last one 4 days ago
COMBINE-lab
alevin-fry COMBINE-lab
16
178
bsd-3-clause
9
🐟 🔬🦀 alevin-fry is an efficient and flexible tool for processing single-cell sequencing data, currently focused on single-cell transcriptomics and feature barcoding.
10x rust rna-seq single-cell quantification transcriptomics single-cell-rna-seq
Created 2020-07-15
842 commits to master branch, last one 20 days ago
Hoohm
CITE-seq-Count Hoohm
44
82
mit
10
A tool that allows to get UMI counts from a single cell protein assay
10x citeseq dropseq single-cell
Created 2017-08-07
207 commits to master branch, last one 3 years ago
lilab-bcb
cirrocumulus lilab-bcb
17
79
bsd-3-clause
7
Bring your single-cell data to life
10x webgl scanpy seurat anndata spatial scrna-seq smartseq2 single-cell visualization bioinformatics transcriptomics data-visualization
Created 2019-10-04
2,110 commits to main branch, last one 6 months ago