71 results found Sort:

729
3.2k
bsd-3-clause
156
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
Created 2017-11-23
2,374 commits to r1.6.1 branch, last one 8 months ago
144
2.6k
other
208
Sampler, Sequencer, Multi-engine synth and effects - in a box! [WIP]
Created 2017-02-21
1,241 commits to develop branch, last one about a year ago
333
1.9k
mit
50
An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)
Created 2017-10-31
459 commits to master branch, last one 13 days ago
594
1.7k
other
153
Official code repository for GATK versions 4 and up
Created 2014-12-02
4,724 commits to master branch, last one a day ago
1.0k
1.4k
other
71
Data intensive science for everyone.
Created 2015-02-23
79,413 commits to dev branch, last one 19 hours ago
138
762
other
32
SPAdes Genome Assembler
Created 2016-06-01
15,108 commits to main branch, last one 15 days ago
100
702
mit
22
fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing
Created 2017-08-24
234 commits to master branch, last one 2 months ago
49
498
apache-2.0
53
Simple & Efficient data access for Scala and Scala.js
Created 2016-03-04
1,377 commits to main branch, last one a day ago
51
377
mit
20
A Python package for creating and manipulating musical patterns, designed for use in algorithmic composition, generative music and sonification. Can be used to generate MIDI events, MIDI files, OSC me...
Created 2011-08-04
591 commits to master branch, last one 10 days ago
79
335
other
31
MiXCR is an ultimate software platform for analysis of Next-Generation Sequencing (NGS) data for immune profiling.
Created 2015-03-30
3,986 commits to develop branch, last one 20 days ago
Rapid large-scale prokaryote pan genome analysis
Created 2013-04-18
930 commits to master branch, last one 2 years ago
Structural variant toolkit for VCFs
Created 2018-04-13
1,350 commits to develop branch, last one 18 hours ago
126
306
gpl-3.0
14
Analysis Pipeline for Single Cell ATAC-seq
Created 2019-02-19
228 commits to master branch, last one 2 years ago
14
306
gpl-3.0
12
A minimal and human-readable language and environment for the live coding of algorithmic electronic music.
Created 2019-11-19
646 commits to master branch, last one 26 days ago
243
285
unknown
50
A Java API for high-throughput sequencing data (HTS) formats.
Created 2014-04-29
2,848 commits to master branch, last one 22 days ago
114
274
agpl-3.0
19
Intuitive graphical web interface for running BLAST bioinformatics tool (i.e. have your own custom NCBI BLAST site!)
Created 2010-10-01
2,453 commits to master branch, last one 2 days ago
68
246
gpl-3.0
15
SortMeRNA: next-generation sequence filtering and alignment tool
Created 2014-03-14
1,343 commits to master branch, last one about a month ago
94
245
apache-2.0
20
Python library to parse, format, validate, normalize, and map sequence variants. `pip install hgvs`
Created 2017-03-09
1,663 commits to main branch, last one 2 months ago
Artemis is a free genome viewer and annotation tool that allows visualization of sequence features and the results of analyses within the context of the sequence, and its six-frame translation
Created 2009-09-30
5,443 commits to master branch, last one about a year ago
A tool to circularize genome assemblies
Created 2015-04-16
387 commits to master branch, last one about a year ago
Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement
Created 2020-06-12
6,428 commits to master branch, last one 8 days ago
38
218
gpl-3.0
5
Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data
Created 2019-08-06
118 commits to master branch, last one about a year ago
62
216
gpl-2.0
21
UGENE is free open-source cross-platform bioinformatics software
Created 2016-03-11
17,056 commits to master branch, last one a day ago
54
200
unknown
7
A collection of scripts and notes related to genomics and bioinformatics
Created 2015-12-22
118 commits to master branch, last one 14 days ago
:rocket: A sequencing simulator
Created 2016-11-16
644 commits to master branch, last one 9 months ago
51
175
gpl-2.0
11
Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins
Created 2011-11-01
2,508 commits to master branch, last one 6 days ago
Antimicrobial Resistance Identification By Assembly
Created 2015-02-11
1,797 commits to master branch, last one about a year ago
34
169
gpl-3.0
14
CLI tool for flexible and fast adaptive sampling on ONT sequencers
Created 2019-11-08
406 commits to main branch, last one 2 months ago
10
162
apache-2.0
5
Genomics Extension for SQLite
Created 2020-05-26
173 commits to main branch, last one 10 months ago
12
145
bsd-3-clause
10
BAM Statistics, Feature Counting and Annotation
Created 2016-02-25
790 commits to main branch, last one 21 days ago