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DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
Created
2017-11-23
2,374 commits to r1.6.1 branch, last one 7 months ago
Sampler, Sequencer, Multi-engine synth and effects - in a box! [WIP]
Created
2017-02-21
1,241 commits to develop branch, last one about a year ago
An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)
Created
2017-10-31
453 commits to master branch, last one 27 days ago
Official code repository for GATK versions 4 and up
Created
2014-12-02
4,719 commits to master branch, last one 14 days ago
Data intensive science for everyone.
Created
2015-02-23
78,965 commits to dev branch, last one 9 hours ago
SPAdes Genome Assembler
Created
2016-06-01
15,108 commits to main branch, last one 23 hours ago
fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing
Created
2017-08-24
234 commits to master branch, last one 2 months ago
Simple & Efficient data access for Scala and Scala.js
Created
2016-03-04
1,376 commits to main branch, last one a day ago
A Python package for creating and manipulating musical patterns, designed for use in algorithmic composition, generative music and sonification. Can be used to generate MIDI events, MIDI files, OSC me...
Created
2011-08-04
582 commits to master branch, last one 8 days ago
MiXCR is an ultimate software platform for analysis of Next-Generation Sequencing (NGS) data for immune profiling.
Created
2015-03-30
3,986 commits to develop branch, last one 6 days ago
Rapid large-scale prokaryote pan genome analysis
Created
2013-04-18
930 commits to master branch, last one 2 years ago
Structural variant toolkit for VCFs
Created
2018-04-13
1,343 commits to develop branch, last one 13 days ago
Analysis Pipeline for Single Cell ATAC-seq
Created
2019-02-19
228 commits to master branch, last one 2 years ago
A minimal and human-readable language and environment for the live coding of algorithmic electronic music.
Created
2019-11-19
646 commits to master branch, last one 11 days ago
A Java API for high-throughput sequencing data (HTS) formats.
Created
2014-04-29
2,848 commits to master branch, last one 8 days ago
Intuitive graphical web interface for running BLAST bioinformatics tool (i.e. have your own custom NCBI BLAST site!)
Created
2010-10-01
2,450 commits to master branch, last one 15 days ago
SortMeRNA: next-generation sequence filtering and alignment tool
Created
2014-03-14
1,343 commits to master branch, last one about a month ago
Python library to parse, format, validate, normalize, and map sequence variants. `pip install hgvs`
Created
2017-03-09
1,663 commits to main branch, last one 2 months ago
Artemis is a free genome viewer and annotation tool that allows visualization of sequence features and the results of analyses within the context of the sequence, and its six-frame translation
Created
2009-09-30
5,443 commits to master branch, last one about a year ago
A tool to circularize genome assemblies
Created
2015-04-16
387 commits to master branch, last one about a year ago
Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement
Created
2020-06-12
6,424 commits to master branch, last one a day ago
Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data
Created
2019-08-06
118 commits to master branch, last one about a year ago
UGENE is free open-source cross-platform bioinformatics software
Created
2016-03-11
17,047 commits to master branch, last one 2 days ago
A collection of scripts and notes related to genomics and bioinformatics
Created
2015-12-22
117 commits to master branch, last one 2 months ago
:rocket: A sequencing simulator
Created
2016-11-16
644 commits to master branch, last one 8 months ago
Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins
Created
2011-11-01
2,418 commits to master branch, last one 5 months ago
Antimicrobial Resistance Identification By Assembly
Created
2015-02-11
1,797 commits to master branch, last one about a year ago
CLI tool for flexible and fast adaptive sampling on ONT sequencers
Created
2019-11-08
406 commits to main branch, last one about a month ago
Genomics Extension for SQLite
Created
2020-05-26
173 commits to main branch, last one 9 months ago
BAM Statistics, Feature Counting and Annotation
Created
2016-02-25
790 commits to main branch, last one 7 days ago