72 results found Sort:

725
3.2k
bsd-3-clause
156
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
Created 2017-11-23
2,374 commits to r1.6.1 branch, last one 7 months ago
144
2.6k
other
208
Sampler, Sequencer, Multi-engine synth and effects - in a box! [WIP]
Created 2017-02-21
1,241 commits to develop branch, last one about a year ago
334
1.9k
mit
50
An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)
Created 2017-10-31
453 commits to master branch, last one 27 days ago
591
1.7k
other
153
Official code repository for GATK versions 4 and up
Created 2014-12-02
4,719 commits to master branch, last one 14 days ago
1.0k
1.4k
other
71
Data intensive science for everyone.
Created 2015-02-23
78,965 commits to dev branch, last one 9 hours ago
136
753
other
32
SPAdes Genome Assembler
Created 2016-06-01
15,108 commits to main branch, last one 23 hours ago
100
698
mit
22
fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing
Created 2017-08-24
234 commits to master branch, last one 2 months ago
49
497
apache-2.0
53
Simple & Efficient data access for Scala and Scala.js
Created 2016-03-04
1,376 commits to main branch, last one a day ago
51
373
mit
20
A Python package for creating and manipulating musical patterns, designed for use in algorithmic composition, generative music and sonification. Can be used to generate MIDI events, MIDI files, OSC me...
Created 2011-08-04
582 commits to master branch, last one 8 days ago
79
333
other
31
MiXCR is an ultimate software platform for analysis of Next-Generation Sequencing (NGS) data for immune profiling.
Created 2015-03-30
3,986 commits to develop branch, last one 6 days ago
Rapid large-scale prokaryote pan genome analysis
Created 2013-04-18
930 commits to master branch, last one 2 years ago
Structural variant toolkit for VCFs
Created 2018-04-13
1,343 commits to develop branch, last one 13 days ago
126
305
gpl-3.0
14
Analysis Pipeline for Single Cell ATAC-seq
Created 2019-02-19
228 commits to master branch, last one 2 years ago
13
304
gpl-3.0
12
A minimal and human-readable language and environment for the live coding of algorithmic electronic music.
Created 2019-11-19
646 commits to master branch, last one 11 days ago
244
285
unknown
50
A Java API for high-throughput sequencing data (HTS) formats.
Created 2014-04-29
2,848 commits to master branch, last one 8 days ago
113
271
agpl-3.0
20
Intuitive graphical web interface for running BLAST bioinformatics tool (i.e. have your own custom NCBI BLAST site!)
Created 2010-10-01
2,450 commits to master branch, last one 15 days ago
68
244
gpl-3.0
15
SortMeRNA: next-generation sequence filtering and alignment tool
Created 2014-03-14
1,343 commits to master branch, last one about a month ago
94
244
apache-2.0
20
Python library to parse, format, validate, normalize, and map sequence variants. `pip install hgvs`
Created 2017-03-09
1,663 commits to main branch, last one 2 months ago
Artemis is a free genome viewer and annotation tool that allows visualization of sequence features and the results of analyses within the context of the sequence, and its six-frame translation
Created 2009-09-30
5,443 commits to master branch, last one about a year ago
A tool to circularize genome assemblies
Created 2015-04-16
387 commits to master branch, last one about a year ago
Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement
Created 2020-06-12
6,424 commits to master branch, last one a day ago
38
217
gpl-3.0
5
Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data
Created 2019-08-06
118 commits to master branch, last one about a year ago
62
213
gpl-2.0
21
UGENE is free open-source cross-platform bioinformatics software
Created 2016-03-11
17,047 commits to master branch, last one 2 days ago
54
200
unknown
7
A collection of scripts and notes related to genomics and bioinformatics
Created 2015-12-22
117 commits to master branch, last one 2 months ago
:rocket: A sequencing simulator
Created 2016-11-16
644 commits to master branch, last one 8 months ago
50
174
gpl-2.0
11
Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins
Created 2011-11-01
2,418 commits to master branch, last one 5 months ago
Antimicrobial Resistance Identification By Assembly
Created 2015-02-11
1,797 commits to master branch, last one about a year ago
34
169
gpl-3.0
14
CLI tool for flexible and fast adaptive sampling on ONT sequencers
Created 2019-11-08
406 commits to main branch, last one about a month ago
10
162
apache-2.0
5
Genomics Extension for SQLite
Created 2020-05-26
173 commits to main branch, last one 9 months ago
12
144
bsd-3-clause
10
BAM Statistics, Feature Counting and Annotation
Created 2016-02-25
790 commits to main branch, last one 7 days ago