28 results found Sort:

144
789
other
33
SPAdes Genome Assembler
Created 2016-06-01
15,128 commits to main branch, last one 16 hours ago
132
491
other
28
Java utilities for Bioinformatics
Created 2013-05-06
3,387 commits to master branch, last one 18 days ago
A curated list of resources for learning bioinformatics.
Created 2017-05-09
63 commits to master branch, last one 2 years ago
428
422
mit
134
Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
Created 2019-04-30
7,941 commits to master branch, last one 11 hours ago
Rapid large-scale prokaryote pan genome analysis
Created 2013-04-18
930 commits to master branch, last one 2 years ago
40
296
mit
22
NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on reads that span structural variations
Created 2016-09-01
668 commits to master branch, last one 3 years ago
Fast taxonomic classification of metagenomic sequencing reads using a protein reference database
Created 2015-11-16
252 commits to master branch, last one about a month ago
Artemis is a free genome viewer and annotation tool that allows visualization of sequence features and the results of analyses within the context of the sequence, and its six-frame translation
Created 2009-09-30
5,443 commits to master branch, last one about a year ago
A tool to circularize genome assemblies
Created 2015-04-16
387 commits to master branch, last one about a year ago
Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement
Created 2020-06-12
6,441 commits to master branch, last one 13 hours ago
52
182
gpl-2.0
11
Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins
Created 2011-11-01
2,509 commits to master branch, last one about a month ago
Antimicrobial Resistance Identification By Assembly
Created 2015-02-11
1,797 commits to master branch, last one about a year ago
NGLess: NGS with less work
Created 2013-01-08
2,453 commits to main branch, last one 6 months ago
42
137
unknown
13
Rare variant test software for next generation sequencing data
Created 2013-01-09
1,204 commits to master branch, last one 3 years ago
Get assembly statistics from FASTA and FASTQ files
Created 2014-04-04
36 commits to master branch, last one about a year ago
37
111
gpl-3.0
10
Program for estimating πN/πS, dN/dS, and other diversity measures from next-generation sequencing data
Created 2015-05-24
236 commits to master branch, last one about a year ago
Microsatellite Instability (MSI) detection using high-throughput sequencing data.
Created 2019-07-04
178 commits to master branch, last one 3 months ago
15
96
unknown
8
VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.
Created 2016-02-15
203 commits to master branch, last one 9 months ago
21
92
apache-2.0
6
DeepMicrobes: taxonomic classification for metagenomics with deep learning
Created 2019-07-03
49 commits to master branch, last one 2 years ago
Command line utility for manipulating Illumina-generated FASTQ files.
Created 2018-03-12
451 commits to master branch, last one 21 days ago
36
75
bsd-3-clause
7
Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)
Created 2016-09-05
187 commits to main branch, last one about a year ago
Python3 scripts to manipulate FASTA and FASTQ files
Created 2013-09-06
309 commits to master branch, last one 3 months ago
This repository has no description...
Created 2015-11-12
396 commits to master branch, last one 4 years ago
Improve the quality of a denovo assembly by scaffolding and gap filling
Created 2012-08-15
384 commits to master branch, last one 4 years ago
de novo virus assembler of Illumina paired reads
Created 2014-04-30
299 commits to master branch, last one 3 years ago
MrBiomics: Modules & Recipes augment Bioinformatics for Multi-Omics Analyses
Created 2022-03-28
91 commits to main branch, last one about a month ago
9
34
apache-2.0
7
Rust crates for working with Workflow Description Language (WDL) documents.
Created 2023-10-30
325 commits to main branch, last one 3 days ago