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SPAdes Genome Assembler
Created
2016-06-01
15,123 commits to main branch, last one 5 days ago
Java utilities for Bioinformatics
Created
2013-05-06
3,293 commits to master branch, last one 5 months ago
A curated list of resources for learning bioinformatics.
Created
2017-05-09
63 commits to master branch, last one 2 years ago
Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
Created
2019-04-30
7,940 commits to master branch, last one 18 days ago
Rapid large-scale prokaryote pan genome analysis
Created
2013-04-18
930 commits to master branch, last one 2 years ago
NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on reads that span structural variations
Created
2016-09-01
668 commits to master branch, last one 3 years ago
Fast taxonomic classification of metagenomic sequencing reads using a protein reference database
Created
2015-11-16
249 commits to master branch, last one 5 months ago
Artemis is a free genome viewer and annotation tool that allows visualization of sequence features and the results of analyses within the context of the sequence, and its six-frame translation
Created
2009-09-30
5,443 commits to master branch, last one about a year ago
A tool to circularize genome assemblies
Created
2015-04-16
387 commits to master branch, last one about a year ago
Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement
Created
2020-06-12
6,430 commits to master branch, last one 14 days ago
Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins
Created
2011-11-01
2,508 commits to master branch, last one about a month ago
Antimicrobial Resistance Identification By Assembly
Created
2015-02-11
1,797 commits to master branch, last one about a year ago
NGLess: NGS with less work
Created
2013-01-08
2,453 commits to main branch, last one 4 months ago
Rare variant test software for next generation sequencing data
Created
2013-01-09
1,204 commits to master branch, last one 3 years ago
Get assembly statistics from FASTA and FASTQ files
Created
2014-04-04
36 commits to master branch, last one about a year ago
Program for estimating πN/πS, dN/dS, and other diversity measures from next-generation sequencing data
Created
2015-05-24
236 commits to master branch, last one about a year ago
Microsatellite Instability (MSI) detection using high-throughput sequencing data.
Created
2019-07-04
178 commits to master branch, last one about a month ago
VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.
Created
2016-02-15
203 commits to master branch, last one 7 months ago
DeepMicrobes: taxonomic classification for metagenomics with deep learning
Created
2019-07-03
49 commits to master branch, last one 2 years ago
Infectious Disease Sequencing Platform
Created
2017-08-02
6,044 commits to main branch, last one 7 days ago
Command line utility for manipulating Illumina-generated FASTQ files.
Created
2018-03-12
449 commits to master branch, last one about a month ago
Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)
Created
2016-09-05
187 commits to main branch, last one about a year ago
Python3 scripts to manipulate FASTA and FASTQ files
Created
2013-09-06
309 commits to master branch, last one about a month ago
This repository has no description...
Created
2015-11-12
396 commits to master branch, last one 3 years ago
Improve the quality of a denovo assembly by scaffolding and gap filling
Created
2012-08-15
384 commits to master branch, last one 4 years ago
de novo virus assembler of Illumina paired reads
Created
2014-04-30
299 commits to master branch, last one 3 years ago
MrBiomics: Modules & Recipes augment Bioinformatics for Multi-Omics Analyses
Created
2022-03-28
91 commits to main branch, last one 4 days ago
Rust crates for working with Workflow Description Language (WDL) documents.
Created
2023-10-30
294 commits to main branch, last one 3 days ago