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An analysis and visualization platform for 'omics data
Created
2014-02-26
19,511 commits to master branch, last one a day ago
An open-source toolkit for large-scale genomic analysis
Created
2019-10-04
501 commits to main branch, last one 4 months ago
Tools to work with variant call format files
Created
2013-10-28
1,471 commits to master branch, last one 19 days ago
Implementation of the Pairwise Sequentially Markovian Coalescent (PSMC) model
Created
2011-01-23
70 commits to master branch, last one 2 years ago
A fully reproducible and state-of-the-art ancient DNA analysis pipeline
Created
2018-06-03
3,271 commits to master branch, last one 8 months ago
An R package to analyse and visualise admixture proportions from STRUCTURE, fastSTRUCTURE, TESS, ADMIXTURE etc.
Created
2014-02-16
166 commits to master branch, last one 4 years ago
Program for estimating πN/πS, dN/dS, and other diversity measures from next-generation sequencing data
Created
2015-05-24
236 commits to master branch, last one about a year ago
Application of pan-genome for population
Created
2022-04-26
268 commits to main branch, last one 4 months ago
PopPUNK 👨🎤 (POPulation Partitioning Using Nucleotide Kmers)
Created
2018-01-09
2,414 commits to master branch, last one about a month ago
A flexible, scalable, and reproducible pipeline to automate variant calling from raw sequence reads, with lots of bells and whistles - for sampled individuals, and for pool sequencing.
Created
2020-05-06
617 commits to master branch, last one 16 days ago
VCF2Dis: A new simple and efficient software to calculate p-distance matrix and construct population phylogeny based Variant Call Format
Created
2017-08-14
4 commits to master branch, last one a day ago
Causal Mixture Model for GWAS summary statistics
Created
2016-10-07
827 commits to master branch, last one about a year ago
Rapid population clustering with autoencoders
Created
2021-01-20
148 commits to main branch, last one 13 days ago
🌶 An R package for genetic analysis of populations with mixed (clonal/sexual) reproduction
Created
2013-02-19
3,221 commits to main branch, last one 10 months ago
A library for working with phylogenetic and population genetic data.
Created
2014-10-24
4,028 commits to master branch, last one 2 months ago
LDlinkR
Created
2019-05-30
470 commits to master branch, last one 10 months ago
Population genetic simulations in R 🌍
Created
2021-02-18
2,733 commits to main branch, last one 8 days ago
A pipeline to select optimal markers for microbial phylogenomics and species tree estimation using the multispecies coalescent and concatenation approaches
Created
2017-05-12
927 commits to master branch, last one 7 months ago
feature-based deep learning for the identification of selective sweeps
Created
2018-01-22
150 commits to master branch, last one about a month ago
deep learning prediction of geographic location from individual genome sequences
Created
2019-06-01
157 commits to master branch, last one about a month ago
Fast, Accurate and Memory-Efficient Principal Component Analysis All in One
Created
2020-11-30
363 commits to main branch, last one 5 days ago
Genotype Representation Graph Library
Created
2024-04-12
48 commits to main branch, last one 14 days ago