22 results found Sort:

Circular visualization in Python (Circos Plot, Chord Diagram, Radar Chart)
Created 2022-12-17
223 commits to main branch, last one 24 days ago
189
797
bsd-2-clause
36
Python library to facilitate genome assembly, annotation, and comparative genomics
Created 2010-12-01
3,052 commits to main branch, last one a day ago
66
648
other
12
A grammar of graphics for comparative genomics
Created 2018-02-14
541 commits to master branch, last one 19 days ago
146
449
gpl-3.0
29
An analysis and visualization platform for 'omics data
Created 2014-02-26
19,470 commits to master branch, last one 6 hours ago
89
333
bsd-2-clause
16
Eukaryotic Genome Annotation Pipeline
Created 2015-12-18
1,513 commits to master branch, last one 28 days ago
A genome visualization python package for comparative genomics
Created 2022-05-20
438 commits to main branch, last one about a month ago
71
294
other
22
Chromosome visualization for the web
Created 2015-02-04
3,264 commits to master branch, last one a day ago
30
255
other
13
Build a partitioned pangenome graph from microbial genomes
Created 2017-10-20
2,215 commits to master branch, last one 2 months ago
68
227
other
21
HyPhy: Hypothesis testing using Phylogenies
Created 2011-08-31
3,862 commits to master branch, last one 21 days ago
A fast whole-genome aligner based on de Bruijn graphs
Created 2017-01-10
408 commits to master branch, last one 16 days ago
Recentrifuge: robust comparative analysis and contamination removal for metagenomics
Created 2017-08-01
329 commits to master branch, last one 4 months ago
A tool for drawing ANI clustermap between all-vs-all microbial genomes
Created 2022-03-24
83 commits to main branch, last one 7 months ago
14
70
mpl-2.0
5
FastOMA is a scalable software package to infer orthology relationship.
Created 2022-07-18
646 commits to main branch, last one 2 days ago
A Scalable GPU-Based Whole Genome Aligner, published in SC20: https://doi.ieeecomputersociety.org/10.1109/SC41405.2020.00043
Created 2019-10-26
428 commits to main branch, last one 2 years ago
A tool for classifying prokaryote protein sequences into COG(Cluster of Orthologous Genes) functional category
Created 2022-03-18
92 commits to main branch, last one about a year ago
4
53
bsd-3-clause
2
zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)
Created 2022-12-27
432 commits to main branch, last one 8 days ago
69
51
apache-2.0
13
The Ensembl Compara Perl API and SQL schema
Created 2013-11-25
20,664 commits to release/113 branch, last one 3 months ago
genEra is a fast and easy-to-use command-line tool that estimates the age of the last common ancestor of protein-coding gene families.
Created 2022-04-19
161 commits to main branch, last one 2 months ago
🧬 o r t h o g e n e 🧬✨✨✨✨✨✨✨ Interspecies gene mapping✨✨✨✨✨ 🦠 πŸ” 🌱 πŸ” 🌳 πŸ” 🍎 πŸ” 🍊 πŸ” πŸͺ± πŸ” πŸͺ° πŸ” 🐟 πŸ” 🦎 πŸ” πŸ“ πŸ” πŸ¦‡ πŸ” πŸ„ πŸ” πŸ– πŸ” 🐐 πŸ” 🐎 πŸ” 🐈 πŸ” πŸ• πŸ” 🐁 πŸ” πŸ’ πŸ” 🦧 πŸ” 🦍 πŸ” πŸƒβ€β™€οΈ
Created 2021-07-27
282 commits to main branch, last one about a year ago
4
38
gpl-3.0
2
EzAAI - High Throughput Prokaryotic AAI Calculator
Created 2021-02-02
63 commits to main branch, last one 4 months ago
A comparative genomics workflow using Nextflow, conda, Julia and R
Created 2022-11-09
97 commits to main branch, last one 10 months ago