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Circular visualization in Python (Circos Plot, Chord Diagram, Radar Chart)
Created
2022-12-17
223 commits to main branch, last one about a month ago
Python library to facilitate genome assembly, annotation, and comparative genomics
Created
2010-12-01
3,055 commits to main branch, last one 11 hours ago
A grammar of graphics for comparative genomics
Created
2018-02-14
541 commits to master branch, last one about a month ago
An analysis and visualization platform for 'omics data
Created
2014-02-26
19,515 commits to master branch, last one 4 days ago
Eukaryotic Genome Annotation Pipeline
Created
2015-12-18
1,515 commits to master branch, last one 18 days ago
A genome visualization python package for comparative genomics
Created
2022-05-20
438 commits to main branch, last one 3 months ago
Chromosome visualization for the web
Created
2015-02-04
3,293 commits to master branch, last one about a month ago
Build a partitioned pangenome graph from microbial genomes
Created
2017-10-20
2,215 commits to master branch, last one 3 months ago
HyPhy: Hypothesis testing using Phylogenies
Created
2011-08-31
3,868 commits to master branch, last one 5 days ago
A fast whole-genome aligner based on de Bruijn graphs
Created
2017-01-10
408 commits to master branch, last one about a month ago
Genome wide orthology inference and dNdS estimation
Created
2014-07-08
1,087 commits to master branch, last one about a year ago
Recentrifuge: robust comparative analysis and contamination removal for metagenomics
Created
2017-08-01
334 commits to master branch, last one 11 days ago
A tool for drawing ANI clustermap between all-vs-all microbial genomes
Created
2022-03-24
83 commits to main branch, last one 8 months ago
FastOMA is a scalable software package to infer orthology relationship.
Created
2022-07-18
646 commits to main branch, last one about a month ago
A Scalable GPU-Based Whole Genome Aligner, published in SC20: https://doi.ieeecomputersociety.org/10.1109/SC41405.2020.00043
Created
2019-10-26
428 commits to main branch, last one 2 years ago
A tool for classifying prokaryote protein sequences into COG(Cluster of Orthologous Genes) functional category
Created
2022-03-18
92 commits to main branch, last one about a year ago
zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)
Created
2022-12-27
436 commits to main branch, last one 28 days ago
The Ensembl Compara Perl API and SQL schema
Created
2013-11-25
20,664 commits to release/113 branch, last one 5 months ago
genEra is a fast and easy-to-use command-line tool that estimates the age of the last common ancestor of protein-coding gene families.
Created
2022-04-19
161 commits to main branch, last one 3 months ago
🧬 o r t h o g e n e 🧬✨✨✨✨✨✨✨ Interspecies gene mapping✨✨✨✨✨ 🦠 🔁 🌱 🔁 🌳 🔁 🍎 🔁 🍊 🔁 🪱 🔁 🪰 🔁 🐟 🔁 🦎 🔁 🐓 🔁 🦇 🔁 🐄 🔁 🐖 🔁 🐐 🔁 🐎 🔁 🐈 🔁 🐕 🔁 🐁 🔁 🐒 🔁 🦧 🔁 🦍 🔁 🏃♀️
Created
2021-07-27
285 commits to main branch, last one 15 days ago
A comparative genomics workflow using Nextflow, conda, Julia and R
Created
2022-11-09
97 commits to main branch, last one 11 months ago
EzAAI - High Throughput Prokaryotic AAI Calculator
Created
2021-02-02
63 commits to main branch, last one 5 months ago