39 results found Sort:

benjjneb
dada2 benjjneb
141
460
lgpl-3.0
41
Accurate sample inference from amplicon data with single nucleotide resolution
amplicon taxonomy microbiome bioconductor metagenomics metabarcoding bioinformatics
Created 2014-12-17
782 commits to master branch, last one about a month ago
bernatgel
karyoploteR bernatgel
42
292
unknown
7
karyoploteR - An R/Bioconductor package to plot arbitrary data along the genome
genome rstats bioconductor plotting-in-r bioinformatics data-visualization genomics-visualization
Created 2016-06-07
581 commits to devel branch, last one 5 months ago
BioinformaticsFMRP
TCGAbiolinks BioinformaticsFMRP
109
282
unknown
25
TCGAbiolinks
r gdc bioc tcga tcga-data bioconductor tcgabiolinks integrative-analysis
Created 2015-03-02
28,940 commits to master branch, last one 2 months ago
datacamp
rdocumentation-2.0 datacamp
43
274
mit
22
📚 RDocumentation provides an easy way to search the documentation for every version of every R package on CRAN and Bioconductor.
cran rstats packages bioconductor documentation
Created 2020-11-25
305 commits to master branch, last one 2 months ago
Oshlack
splatter Oshlack
55
210
gpl-3.0
6
Simple simulation of single-cell RNA sequencing data
scrna-seq simulation bioconductor bioinformatics
Created 2016-10-04
896 commits to devel branch, last one about a month ago
mikelove
bioc-refcard mikelove
64
184
unknown
20
Bioconductor cheat sheet
r guide howto rnaseq compbio cheatsheet microarray bioconductor bioinformatics
Created 2012-12-03
94 commits to master branch, last one 2 years ago
sneumann
xcms sneumann
81
177
other
23
This is the git repository matching the Bioconductor package xcms: LC/MS and GC/MS Data Analysis
r bioconductor metabolomics peak-detection feature-detection mass-spectrometry
Created 2014-03-28
3,819 commits to devel branch, last one about a month ago
GoekeLab
bambu GoekeLab
22
169
gpl-3.0
7
Reference-guided transcript discovery and quantification for long read RNA-Seq data
r bambu rna-seq nanopore long-reads bioconductor transcriptomics rna-seq-analysis nanopore-sequencing transcript-quantification transcript-reconstruction
Created 2020-02-07
2,144 commits to devel branch, last one 2 months ago
SingleR-inc
SingleR SingleR-inc
19
164
gpl-3.0
12
Clone of the Bioconductor repository for the SingleR package.
singler bioconductor
Created 2019-06-19
755 commits to master branch, last one about a month ago
stemangiola
tidybulk stemangiola
23
162
unknown
6
Brings bulk and pseudobulk transcriptomics to the tidyverse
pca gsea pipe tidy tsne edger deseq2 entrez tibble tidy-data tidyverse redundancy ensembl-ids transcripts bioconductor gene-symbols mds-dimensions transcriptomics differential-expression bulk-transcriptional-analyses
Created 2019-08-28
1,458 commits to master branch, last one about a month ago
mixOmicsTeam
mixOmics mixOmicsTeam
49
146
unknown
9
Development repository for the Bioconductor package 'mixOmics '
r omics r-pkg rstats genomics r-package r-project bioconductor genomics-data rstats-package multivariate-analysis genomics-visualization multivariate-statistics
Created 2018-10-04
889 commits to master branch, last one 8 months ago
tidyomics
plyranges tidyomics
19
135
unknown
14
A grammar of genomic data transformation
dplyr genomics tidy-data bioconductor data-analysis genomic-ranges
Created 2017-08-28
617 commits to devel branch, last one 2 months ago
theislab
zellkonverter theislab
26
133
other
5
Conversion between scRNA-seq objects
r scrna-seq conversion bioconductor
Created 2020-06-08
448 commits to devel branch, last one 8 days ago
Bioconductor
Contributions Bioconductor
33
131
unknown
27
Contribute Packages to Bioconductor
bioconductor
Created 2016-03-03
65 commits to devel branch, last one 9 months ago
thelovelab
tximport thelovelab
33
131
unknown
15
Transcript quantification import for modular pipelines
deseq2 rnaseq bioconductor
Created 2015-11-18
309 commits to devel branch, last one 3 months ago
lgatto
MSnbase lgatto
50
123
unknown
14
Base Classes and Functions for Mass Spectrometry and Proteomics
r proteomics bioconductor visualisation bioinformatics proteomics-data mass-spectrometry
Created 2010-10-02
4,018 commits to master branch, last one about a month ago
waldronlab
curatedMetagenomicData waldronlab
27
122
artistic-2.0
13
Curated Metagenomic Data of the Human Microbiome
bioconductor experimenthub bioconductor-package
Created 2016-05-06
1,094 commits to devel branch, last one about a month ago
Bioconductor
BiocStickers Bioconductor
84
119
other
15
Stickers for some Bioconductor packages - feel free to contribute and/or modify.
stickers bioconductor
Created 2017-03-02
783 commits to devel branch, last one about a month ago
theislab
anndata2ri theislab
16
116
gpl-3.0
7
Convert between AnnData and SingleCellExperiment
rpy2 scanpy jupyter single-cell bioconductor
Created 2019-02-20
174 commits to main branch, last one 4 days ago
biobakery
Maaslin2 biobakery
35
108
other
8
MaAsLin2: Microbiome Multivariate Association with Linear Models
tools public biobakery microbiome bioconductor metagenomics repeated-measures multiple-covariates false-discovery-rate differential-abundance-analysis
Created 2019-05-14
519 commits to master branch, last one 4 days ago
mhahsler
rBLAST mhahsler
22
102
gpl-3.0
3
Interface for the Basic Local Alignment Search Tool (BLAST) - R-Package
bioconductor blast-search bioinformatics
Created 2015-10-07
63 commits to devel branch, last one about a month ago
seandavi
GEOquery seandavi
36
84
mit
6
The bridge between the NCBI Gene Expression Omnibus and Bioconductor
r rstats genomics ncbi-geo bioconductor data-science bioinformatics
Created 2013-07-19
866 commits to main branch, last one 12 months ago
lgatto
RforProteomics lgatto
33
82
unknown
16
Using R and Bioconductor packages for the analysis and comprehension of proteomics data.
r tutorial proteomics bioconductor proteomics-data mass-spectrometry bioconductor-packages
Created 2012-09-10
614 commits to main branch, last one about a year ago
cmap
cmapR cmap
34
82
bsd-3-clause
20
Tools for manipulating annotated data matrices
cmap bioconductor bioinformatics
Created 2017-03-28
275 commits to master branch, last one 2 years ago
Bioconductor
GenomicDataCommons Bioconductor
23
82
unknown
19
Provide R access to the NCI Genomic Data Commons portal.
r nci tcga cancer genomics vignette api-client bioconductor data-science core-services bioinformatics
Created 2016-06-08
605 commits to devel branch, last one about a month ago
teunbrand
ggnomics teunbrand
4
80
other
6
A small project to add ggplot2 extensions
genomics bioconductor visualization ggplot-extension
Created 2019-04-15
182 commits to master branch, last one 3 years ago
microbiome
OMA microbiome
42
75
unknown
11
Orchestrating Microbiome Analysis
r microbiome bioconductor microbiome-analysis-book
Created 2020-11-02
802 commits to devel branch, last one 2 days ago
federicomarini
GeneTonic federicomarini
8
75
other
6
Enjoy your transcriptomic data and analysis responsibly - like sipping a cocktail
r gui shiny bioconductor rna-seq-data transcriptome user-friendly gene-expression transcriptomics data-exploration pathway-analysis rna-seq-analysis data-visualization bioconductor-package reproducible-research functional-enrichment-analysis
Created 2019-06-24
1,069 commits to devel branch, last one about a month ago
LieberInstitute
spatialLIBD LieberInstitute
16
73
unknown
20
Code for the spatialLIBD R/Bioconductor package and shiny app
golem shiny rstats visium 10xgenomics spatiallibd bioconductor spatialexperiment spatial-transcriptomics
Created 2019-12-04
631 commits to devel branch, last one about a month ago
Bioconductor
bioconductor_docker Bioconductor
30
71
artistic-2.0
18
Docker Containers for Bioconductor - NEW!
bioconductor docker-image bioconductor-containers
Created 2019-11-14
397 commits to devel branch, last one 18 hours ago