20 results found Sort:

53
381
gpl-3.0
15
Fast and accurate de novo assembler for long reads
Created 2019-01-09
111 commits to master branch, last one 10 months ago
31
267
unknown
11
Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling
Created 2021-03-30
603 commits to main branch, last one 16 days ago
PEPPER-Margin-DeepVariant
Created 2019-05-10
1,281 commits to r0.8 branch, last one 2 years ago
24
200
gpl-3.0
6
Reference-guided transcript discovery and quantification for long read RNA-Seq data
Created 2020-02-07
2,175 commits to devel branch, last one about a month ago
Long read production pipelines
Created 2019-05-14
581 commits to main branch, last one 11 days ago
Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data
Created 2022-02-18
2,145 commits to master branch, last one 3 days ago
25
124
unknown
6
Nanopore RNA-Seq data from the Singapore Nanopore-Expression Project
Created 2019-02-28
303 commits to master branch, last one 2 months ago
18
119
mit
7
abPOA: an SIMD-based C library for fast partial order alignment using adaptive band
Created 2018-02-11
281 commits to main branch, last one 10 days ago
10
96
other
7
Tandem repeat expansion detection or genotyping from long-read alignments
Created 2019-09-05
284 commits to master branch, last one about a month ago
8
81
bsd-3-clause
6
ClairS - a deep-learning method for long-read somatic small variant calling
Created 2021-07-29
763 commits to main branch, last one 17 days ago
17
79
mit
3
Long-reads Gap-free Chromosome-scale Assembler
Created 2020-04-01
30 commits to master branch, last one 2 years ago
This repository has no description...
Created 2019-04-07
216 commits to master branch, last one 13 days ago
8
78
mit
3
Yet Another Chimeric Read Detector
Created 2018-03-28
183 commits to master branch, last one 4 months ago
Graph-based assembly phasing
Created 2021-12-29
517 commits to main branch, last one 4 months ago
16
74
gpl-3.0
10
⛓ Long Interval Nucleotide K-mer Scaffolder
Created 2015-05-11
610 commits to master branch, last one about a year ago
4
59
bsd-3-clause
3
ClairS-TO - a deep-learning method for tumor-only somatic variant calling
Created 2023-11-07
181 commits to main branch, last one 6 days ago
12
57
gpl-3.0
7
memory efficient, fast & precise taxnomomic classification system for metagenomic read mapping
Created 2017-02-07
1,031 commits to master branch, last one 24 days ago
5
55
agpl-3.0
4
Scalable long read self-correction and assembly polishing with multiple sequence alignment
Created 2018-08-09
307 commits to master branch, last one about a year ago
SneakySnake:snake: is the first and the only pre-alignment filtering algorithm that works efficiently and fast on modern CPU, FPGA, and GPU architectures. It greatly (by more than two orders of magnit...
Created 2019-09-22
73 commits to master branch, last one about a year ago
14
49
gpl-3.0
3
A versatile compressor of third generation sequencing reads.
Created 2021-06-17
22 commits to master branch, last one about a year ago