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Making Protein folding accessible to all!
Created
2021-07-19
1,333 commits to main branch, last one 7 days ago
Generation of protein sequences and evolutionary alignments via discrete diffusion models
Created
2022-06-07
479 commits to main branch, last one 2 months ago
A tool for automated alignment trimming in large-scale phylogenetic analyses. Development version: 2.0
Created
2009-09-20
532 commits to trimAl branch, last one 2 days ago
Algorithm for ultra-scale multiple sequence alignments (3M protein sequences in 5 minutes and 24 GB of RAM)
Created
2016-03-22
94 commits to master branch, last one 3 months ago
abPOA: an SIMD-based C library for fast partial order alignment using adaptive band
Created
2018-02-11
264 commits to main branch, last one 15 days ago
MSA(Multiple Sequence Alignment) visualization python package for sequence analysis
Created
2022-11-13
63 commits to main branch, last one 24 days ago
A Julia package to analyze protein sequences, structures, and evolutionary information
Created
2015-06-18
943 commits to master branch, last one 2 months ago
Implementation of Neural Distance Embeddings for Biological Sequences (NeuroSEED) in PyTorch (NeurIPS 2021)
Created
2021-04-27
19 commits to master branch, last one about a year ago
Exploring Evolution-aware & free protein language models as protein function predictors
esm1b
pytorch
alphafold
benchmark
stability
alphafold2
msa-transformer
msa-construction
metal-ion-binding
contact-prediction
fitness-prediction
protein-annotation
function-prediction
zero-shot-prediction
protein-classification
protein-language-model
remote-homology-detection
multiple-sequence-alignment
Created
2022-10-06
33 commits to main branch, last one 2 months ago
Scalable long read self-correction and assembly polishing with multiple sequence alignment
Created
2018-08-09
307 commits to master branch, last one 10 months ago
Fast and accurate protein structure prediction
Created
2020-09-07
100 commits to master branch, last one 2 years ago
Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments.
Created
2022-07-28
178 commits to main branch, last one about a month ago