11 results found Sort:

pachterlab
gget pachterlab
75
960
bsd-2-clause
10
🧬 gget enables efficient querying of genomic reference databases
gget ncbi blast archs4 enrichr ensembl uniprot alphafold databases reference alphafold2 enrichment-analysis
Created 2022-05-04
2,787 commits to main branch, last one 8 days ago
kyegomez
AlphaFold3 kyegomez
103
764
mit
26
Implementation of Alpha Fold 3 from the paper: "Accurate structure prediction of biomolecular interactions with AlphaFold3" in PyTorch
ai ml bio geneml biology alphafold biology-ai artificial-intelligence
Created 2024-05-08
44 commits to main branch, last one 2 months ago
Urinx
alphafold_pytorch Urinx
92
392
apache-2.0
14
An implementation of the DeepMind's AlphaFold based on PyTorch for research
casp13 alphafold deep-learning contact-prediction structure-prediction pytorch-implementation protein-structure-prediction
Created 2020-02-11
4 commits to master branch, last one 4 years ago
dptech-corp
Uni-Fold dptech-corp
74
380
apache-2.0
7
An open-source platform for developing protein models beyond AlphaFold.
pytorch alphafold deep-learning protein-structure alphafold-multimer
Created 2022-07-30
98 commits to main branch, last one 11 months ago
Zuricho
ParallelFold Zuricho
46
152
unknown
11
Modified version of Alphafold to divide CPU part (MSA and template searching) and GPU part. This can accelerate Alphafold when predicting multiple structures
parafold alphafold alphafold2 parallelization
Created 2021-08-02
67 commits to main branch, last one 10 months ago
kuixu
alphafold kuixu
33
101
apache-2.0
6
Install alphafold on the local machine, get out of docker.
alphafold
Created 2021-07-17
20 commits to main branch, last one 3 years ago
ml4bio
Dense-Homolog-Retrieval ml4bio
4
97
bsd-3-clause
4
Nature Biotechnology: Ultra-fast, sensitive detection of protein remote homologs using deep dense retrieval
protein alphafold dense-retrieval homology-search msa-construction protein-language-model protein-structure-prediction
Created 2022-10-16
15 commits to main branch, last one 4 months ago
cbalbin-bio
pymol-color-alphafold cbalbin-bio
22
76
mit
2
PyMOL extension to color AlphaFold structures by confidence (pLDDT).
pymol alphafold alphafold2 pymol-plugin bioinformatics protein-structure structural-biology computational-biology
Created 2021-11-16
7 commits to master branch, last one 2 years ago
twoXes
awesome-structural-bioinformatics twoXes
10
68
unknown
2
Structural Bioinformatics is awesome. Throw your textbook in the garbage, light the garbage can on fire, and blend the ashes into your cold brew almond milk latte and read this.
biology docking protein genetics genomics alphafold chemistry proteomics awesome-list deep-learning bioinformatics cheminformatics genome-alignment machine-learning protein-structure quantum-chemistry molecular-informatics bioinformatics-analysis bioinformatics-pipeline protein-structure-prediction
Created 2021-03-21
175 commits to main branch, last one about a year ago
elttaes
Revisiting-PLMs elttaes
10
61
mit
2
Exploring Evolution-aware & free protein language models as protein function predictors
esm1b pytorch alphafold benchmark stability alphafold2 msa-transformer msa-construction metal-ion-binding contact-prediction fitness-prediction protein-annotation function-prediction zero-shot-prediction protein-classification protein-language-model remote-homology-detection multiple-sequence-alignment
Created 2022-10-06
33 commits to main branch, last one 3 months ago
CDDLeiden
PCMol CDDLeiden
7
59
mit
6
Multi-target de novo molecular generator conditioned on AlphaFold's latent protein embeddings.
alphafold drug-discovery cheminformatics proteochemometrics de-novo-drug-design protein-language-models chemical-language-models
Created 2024-01-23
45 commits to main branch, last one about a month ago