9 results found Sort:

PaddlePaddle
PaddleHelix PaddlePaddle
189
800
apache-2.0
25
Bio-Computing Platform Featuring Large-Scale Representation Learning and Multi-Task Deep Learning “螺旋桨”生物计算工具集
ddi dti ppi biocomputing deeplearning graph-networks protein-design molecule-design protein-docking protein-folding machine-learning representation-learning rna-structure-prediction self-supervised-learning protein-structure-prediction
Created 2020-11-21
813 commits to dev branch, last one about a month ago
lucidrains
alphafold3-pytorch lucidrains
44
636
mit
42
Implementation of Alphafold 3 in Pytorch
transformers deep-learning denoising-diffusion attention-mechanisms artificial-intelligence protein-structure-prediction
Created 2024-05-08
375 commits to main branch, last one 18 hours ago
RosettaCommons
PyRosetta.notebooks RosettaCommons
143
444
mit
335
Jupyter Notebooks for learning the PyRosetta platform for biomolecular structure prediction and design
dna rosetta pyrosetta google-colab protein-design protein-docking protein-folding jupyter-notebook rna-structure-prediction protein-structure-prediction
Created 2019-05-24
591 commits to master branch, last one 4 months ago
Urinx
alphafold_pytorch Urinx
93
386
apache-2.0
14
An implementation of the DeepMind's AlphaFold based on PyTorch for research
casp13 alphafold deep-learning contact-prediction structure-prediction pytorch-implementation protein-structure-prediction
Created 2020-02-11
4 commits to master branch, last one 4 years ago
FreshAirTonight
af2complex FreshAirTonight
19
141
unknown
7
Predicting direct protein-protein interactions with AlphaFold deep learning neural network models.
alphafold2 deep-learning bioinformatics protein-complexes protein-protein-docking protein-protein-interaction protein-structure-prediction
Created 2021-11-07
117 commits to main branch, last one 2 months ago
zjunlp
OntoProtein zjunlp
22
137
mit
7
[ICLR 2022] OntoProtein: Protein Pretraining With Gene Ontology Embedding
nlp bert iclr protein pytorch iclr2022 ontoprotein pretraining gene-ontology knowledge-graph pretrained-models protein-pretraining protein-function-prediction protein-protein-interaction protein-structure-prediction
Created 2021-12-18
51 commits to main branch, last one about a year ago
twoXes
awesome-structural-bioinformatics twoXes
9
58
unknown
2
Structural Bioinformatics is awesome. Throw your textbook in the garbage, light the garbage can on fire, and blend the ashes into your cold brew almond milk latte and read this.
biology docking protein genetics genomics alphafold chemistry proteomics awesome-list deep-learning bioinformatics cheminformatics genome-alignment machine-learning protein-structure quantum-chemistry molecular-informatics bioinformatics-analysis bioinformatics-pipeline protein-structure-prediction
Created 2021-03-21
175 commits to main branch, last one about a year ago
psipred
DMPfold psipred
16
55
gpl-3.0
7
De novo protein structure prediction using iteratively predicted structural constraints
resnet deep-learning protein-sequence protein-structure protein-structure-prediction
Created 2019-01-10
182 commits to master branch, last one 2 years ago
psipred
DMPfold2 psipred
11
47
gpl-3.0
5
Fast and accurate protein structure prediction
end-to-end deep-learning multiple-sequence-alignment protein-structure-prediction
Created 2020-09-07
100 commits to master branch, last one 2 years ago