10 results found Sort:

aqlaboratory
proteinnet aqlaboratory
130
886
mit
53
Standardized data set for machine learning of protein structure
dataset proteins deep-learning machine-learning protein-sequence protein-structure
Created 2018-03-10
192 commits to master branch, last one 4 years ago
westlake-repl
SaProt westlake-repl
42
424
mit
7
Saprot: Protein Language Model with Structural Alphabet (AA+3Di)
protein foldseek alphafold2 pretraining protein-llm structure-aware protein-sequence protein-structure structural-alphbet predicted-structures protein-language-model representation-learning
Created 2023-10-02
175 commits to main branch, last one 23 hours ago
tbepler
protein-sequence-embedding-iclr2019 tbepler
75
259
other
10
Source code for "Learning protein sequence embeddings using information from structure" - ICLR 2019
pytorch deep-learning language-model protein-modeling protein-sequence protein-embedding protein-structure recurrent-neural-networks protein-representation-learning
Created 2019-02-22
7 commits to master branch, last one 3 years ago
ISYSLAB-HUST
ProtFlash ISYSLAB-HUST
3
104
mit
1
ProtFlash: A lightweight protein language model
bioinformatics protein-sequence pretrained-models protein-embeddings protein-language-model protein-representation-learning
Created 2022-09-22
17 commits to main branch, last one about a year ago
chao1224
ProteinDT chao1224
6
61
mit
5
A Text-guided Protein Design Framework, Nat Mach Intell 2025
llm protein ai4science drug-design protein-design protein-editing foundation-model protein-sequence protein-structure large-language-model
Created 2023-02-05
7 commits to main branch, last one 2 months ago
ostrokach
proteinsolver ostrokach
8
59
mit
1
Graph neural network for generating novel amino acid sequences that fold into proteins with predetermined topologies.
protein bioinformatics protein-design protein-sequence protein-structure structural-biology graph-neural-networks
Created 2020-04-08
406 commits to master branch, last one 4 years ago
VarunUllanat
mint VarunUllanat
4
58
mit
3
Learning the language of protein-protein interactions
ai-for-science protein-sequence computational-biology
Created 2025-02-24
42 commits to main branch, last one 4 days ago
psipred
DMPfold psipred
16
57
gpl-3.0
6
De novo protein structure prediction using iteratively predicted structural constraints
resnet deep-learning protein-sequence protein-structure protein-structure-prediction
Created 2019-01-10
182 commits to master branch, last one 3 years ago
MartinThoma
propy3 MartinThoma
13
41
gpl-2.0
2
A Python 3 version of the protein descriptor package propy
python python3 bioinformatics protein-sequence protein-descriptor dipeptide-composition-descriptors geary-autocorrelation-descriptors
Created 2020-02-26
75 commits to master branch, last one 2 years ago
instadeepai
protein-sequence-bfn instadeepai
2
30
other
9
Supporting code for our paper "Protein Sequence Modelling with Bayesian Flow Networks"
bfns protein-sequence bayesian-flow-networks
Created 2024-09-23
9 commits to main branch, last one 26 days ago