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37

372

mit

6

Saprot: Protein Language Model with Structural Alphabet (AA+3Di)

protein foldseek alphafold2 pretraining protein-llm structure-aware protein-sequence protein-structure structural-alphbet predicted-structures protein-language-model representation-learning

Created 2023-10-02

166 commits to main branch, last one 2 days ago

8

68

mit

3

ProTrek: Navigating the Protein Universe through Tri-Modal Contrastive Learning

mmseqs2 foldseek protein-alignment protein-annotation protein-prediction sequence-structure protein-pretraining contrastive-learning protein-language-model

Created 2024-05-21

114 commits to main branch, last one 12 days ago

20

67

gpl-3.0

7

MMseqs2 app to run on your workstation or servers

vue docker golang mmseqs electron foldseek colabfold alphafold2 bioinformatics docker-compose profile-search sequence-search structure-search

Created 2018-04-19

1,021 commits to master branch, last one 24 days ago

2

36

bsd-3-clause

2

A NumPy port of the foldseek code for encoding protein structures to 3di.

foldseek numpy-library python-library protein-structure

Created 2023-11-25

48 commits to main branch, last one 2 months ago