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MMseqs2 soedinglab

202

1.5k

mit

31

MMseqs2: ultra fast and sensitive search and clustering suite

blast mmseqs linclust taxonomy alignment metagenomics bioinformatics profile-search sequence-search sequence-clustering

Created 2016-07-20

6,485 commits to master branch, last one 10 hours ago

hh-suite soedinglab

136

553

gpl-3.0

25

Remote protein homology detection suite.

cpp simd hhpred hhblits viterbi hh-suite hhsearch alignment opensource bioinformatics profile-search sequence-search protein-structure profile-profile-search

Created 2015-05-04

1,398 commits to master branch, last one about a month ago

muscle rcedgar

23

227

gpl-3.0

7

Multiple sequence and structure alignment with top benchmark scores scalable to thousands of sequences. Generates replicate alignments, enabling assessment of downstream analyses such as trees and pre...

biology algorithms bioinformatics sequence-search protein-alignment protein-structure sequence-clustering nucleotide-alignment protein-structure-alignment

Created 2021-06-19

259 commits to main branch, last one about a month ago

LexicMap shenwei356

4

121

mit

3

LexicMap: efficient sequence alignment against millions of prokaryotic genomes

alignment lexichash sequence-search bacterial-genomes microbial-genomes bacterial-database sequence-alignment large-scale-dataset prokaryotic-genomes

Created 2023-11-18

391 commits to main branch, last one 10 days ago

MMseqs2-App soedinglab

20

67

gpl-3.0

7

MMseqs2 app to run on your workstation or servers

vue docker golang mmseqs electron foldseek colabfold alphafold2 bioinformatics docker-compose profile-search sequence-search structure-search

Created 2018-04-19

1,048 commits to master branch, last one 4 days ago

Toolkit proteinevolution

14

63

apache-2.0

7

The MPI Bioinformatics Toolkit

akka typelevel open-source bioinformatics play-framework profile-search sequence-search web-application protein-structure structural-biology reactive-programming computational-biology profile-profile-search

Created 2016-07-01

7,656 commits to develop branch, last one 3 months ago