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Official git repository for Biopython (originally converted from CVS)
Created
2009-03-15
15,956 commits to master branch, last one a day ago
A versatile pairwise aligner for genomic and spliced nucleotide sequences
Created
2017-07-18
1,152 commits to master branch, last one 3 days ago
Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)
Created
2011-01-14
968 commits to master branch, last one 7 months ago
Accelerated BLAST compatible local sequence aligner.
Created
2015-03-10
2,030 commits to master branch, last one 6 days ago
The next version of bwa-mem
Created
2019-02-26
240 commits to master branch, last one 6 months ago
Versatile open-source tool for microbiome analysis
Created
2014-05-16
3,288 commits to master branch, last one 2 days ago
:book::microscope::coffee: BioJava is an open-source project dedicated to providing a Java library for processing biological data.
Created
2013-04-03
6,856 commits to master branch, last one 2 months ago
Lightweight, super fast C/C++ (& Python) library for sequence alignment using edit (Levenshtein) distance.
Created
2014-01-19
254 commits to master branch, last one 2 months ago
Sequence-to-graph mapper and graph generator
Created
2019-02-08
611 commits to master branch, last one 6 months ago
The modern C++ library for sequence analysis. Contains version 3 of the library and API docs.
Created
2016-04-04
6,794 commits to main branch, last one a day ago
Bidirectionally transformed strings
Created
2019-06-07
144 commits to master branch, last one about a year ago
Align proteins to genomes with splicing and frameshift
Created
2022-08-04
263 commits to master branch, last one about a month ago
Intuitive graphical web interface for running BLAST bioinformatics tool (i.e. have your own custom NCBI BLAST site!)
Created
2010-10-01
2,453 commits to master branch, last one 2 days ago
A fast multiple sequence alignment program.
Created
2019-04-18
401 commits to main branch, last one 7 months ago
Global alignment and alignment extension
Created
2017-06-22
119 commits to master branch, last one about a year ago
Neural Networks for Protein Sequence Alignment
Created
2020-06-04
367 commits to master branch, last one 9 days ago
LexicMap: efficient sequence alignment against millions of prokaryotic genomes
Created
2023-11-18
370 commits to main branch, last one 2 days ago
Comparative Genomics Toolkit 3
Created
2019-09-13
9,521 commits to develop branch, last one a day ago
MSA(Multiple Sequence Alignment) visualization python package for sequence analysis
Created
2022-11-13
60 commits to main branch, last one 2 months ago
Genome wide orthology inference and dNdS estimation
Created
2014-07-08
1,087 commits to master branch, last one about a year ago
A EXPERIMENTAL fork of minimap2 optimized for assembly-to-reference alignment
Created
2020-11-15
47 commits to master branch, last one 3 years ago
Efficient implementations of Needleman-Wunsch and other sequence alignment algorithms written in Rust with Python bindings via PyO3.
Created
2023-04-05
18 commits to main branch, last one 3 months ago
Rust bindings to minimap2 library
Created
2022-09-30
409 commits to main branch, last one 3 months ago
Arioc: GPU-accelerated DNA short-read alignment
Created
2014-12-08
192 commits to master branch, last one about a month ago
BISulfite-seq CUI Toolkit
Created
2015-06-24
524 commits to master branch, last one about a year ago
Universal Transcript Archive: comprehensive genome-transcript alignments; multiple transcript sources, versions, and alignment methods; available as a docker image
Created
2016-09-09
672 commits to main branch, last one 2 days ago
Sequence alignment tools
Created
2017-06-15
180 commits to master branch, last one 3 months ago
A reimplementation of the WaveFront Alignment algorithm at low memory
Created
2022-04-01
119 commits to master branch, last one 6 months ago
SneakySnake:snake: is the first and the only pre-alignment filtering algorithm that works efficiently and fast on modern CPU, FPGA, and GPU architectures. It greatly (by more than two orders of magnit...
Created
2019-09-22
73 commits to master branch, last one about a year ago
Wavefront alignment algorithm (WFA) in Golang
Created
2024-05-21
48 commits to main branch, last one 21 days ago