7 results found Sort:

torognes
vsearch torognes
123
666
other
43
Versatile open-source tool for microbiome analysis
fasta fastq search chimera amplicon clustering microbiome metagenomics metabarcoding bioinformatics sequence-alignment
Created 2014-05-16
3,285 commits to master branch, last one 13 days ago
benjjneb
dada2 benjjneb
142
470
lgpl-3.0
39
Accurate sample inference from amplicon data with single nucleotide resolution
amplicon taxonomy microbiome bioconductor metagenomics metabarcoding bioinformatics
Created 2014-12-17
782 commits to master branch, last one 5 months ago
nf-core
ampliseq nf-core
117
187
mit
152
Amplicon sequencing analysis workflow using DADA2 and QIIME2
16s 18s its edna rrna pacbio qiime2 nf-core illumina nextflow pipeline workflow iontorrent microbiome metagenomics metabarcoding amplicon-sequencing taxonomic-profiling taxonomic-classification
Created 2018-09-26
2,507 commits to master branch, last one 3 months ago
benjjneb
decontam benjjneb
25
147
unknown
12
Simple statistical identification and removal of contaminants in marker-gene and metagenomics sequencing data
amplicon microbiome metagenomics contamination metabarcoding bioinformatics
Created 2017-04-04
78 commits to master branch, last one 3 years ago
grunwaldlab
metacoder grunwaldlab
28
135
other
17
Parsing, Manipulation, and Visualization of Metabarcoding/Taxonomic data
r pcr cran trees taxonomy hierarchical metabarcoding community-diversity
Created 2014-09-10
1,088 commits to master branch, last one 8 months ago
torognes
swarm torognes
23
126
agpl-3.0
14
A robust and fast clustering method for amplicon-based studies
fasta sequence clustering microbiome metabarcoding bioinformatics
Created 2012-11-10
2,935 commits to master branch, last one 7 months ago
pr2database
pr2database pr2database
7
79
mit
12
Protist Ribosomal Reference database (PR2) - SSU rRNA gene database
rrna 18s-rrna database taxonomy eukaryotes metabarcoding
Created 2017-09-29
149 commits to master branch, last one about a year ago