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other

18

Quickly search, compare, and analyze genomic and metagenomic data sets.

kmer rust python minhash sourmash sketching fracminhash hacktoberfest bioinformatics scaled-minhash taxonomic-profiling taxonomic-classification

Created 2016-04-09

2,051 commits to latest branch, last one a day ago

ampliseq nf-core

117

187

mit

152

Amplicon sequencing analysis workflow using DADA2 and QIIME2

16s 18s its edna rrna pacbio qiime2 nf-core illumina nextflow pipeline workflow iontorrent microbiome metagenomics metabarcoding amplicon-sequencing taxonomic-profiling taxonomic-classification

Created 2018-09-26

2,507 commits to master branch, last one 3 months ago

kmcp shenwei356

13

181

mit

6

Accurate metagenomic profiling && Fast large-scale sequence/genome searching

cobs kmer bigsi sketch virome syncmers searching sketching fracminhash metagenomics scaled-minhash taxonomic-profiling taxonomic-classification

Created 2020-10-30

522 commits to main branch, last one about a year ago

taxprofiler nf-core

34

128

mit

153

Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data

nf-core shotgun illumina nanopore nextflow pathogen pipeline workflow profiling long-reads microbiome metagenomics bioinformatics classification taxonomic-profiling taxonomic-classification

Created 2022-02-18

1,985 commits to master branch, last one about a month ago

Taxor JensUweUlrich

2

42

bsd-3-clause

2

Fast and space-efficient taxonomic classification of long reads

kmer bioinf refseq syncmer taxonomy long-read microbiome xor-filter em-algorithm metagenomics bioinformatics pseudo-alignment taxonomic-profiling long-read-sequencing interleaved-xor-filter taxonomic-classification

Created 2022-01-05

103 commits to main branch, last one 7 days ago

taxpasta taxprofiler

7

34

apache-2.0

4

TAXnomic Profile Aggregation and STAndardisation

python profiling metagenomics bioinformatics classification standardisation taxonomic-profiling taxonomic-classifications metagenomic-classification

Created 2022-06-03

602 commits to dev branch, last one 15 days ago