6 results found Sort:

nf-core
ampliseq nf-core
117
187
mit
152
Amplicon sequencing analysis workflow using DADA2 and QIIME2
16s 18s its edna rrna pacbio qiime2 nf-core illumina nextflow pipeline workflow iontorrent microbiome metagenomics metabarcoding amplicon-sequencing taxonomic-profiling taxonomic-classification
Created 2018-09-26
2,507 commits to master branch, last one 3 months ago
microsud
Tools-Microbiome-Analysis microsud
46
110
unknown
12
A list of R environment based tools for microbiome data exploration, statistical analysis and visualization
16s-rrna amplicon microbiota metagenomics microbiome-data amplicon-sequencing microbiome-analysis microbial-communities
Created 2017-08-08
169 commits to master branch, last one about a year ago
grimmlab
MicrobiomeBestPracticeReview grimmlab
38
109
mit
4
Current Challenges and Best Practice Protocols for Microbiome Analysis using Amplicon and Metagenomic Sequencing
16s-rrna assembly pipeline biomedical microbiome metagenomics best-practices bioinformatics amplicon-sequencing microbiome-analysis microbiome-workflow
Created 2018-11-16
101 commits to master branch, last one 5 months ago
KasperSkytte
ampvis2 KasperSkytte
23
67
gpl-3.0
6
Tools for visualising microbial community amplicon data
rstats r-package microbial-ecology amplicon-sequencing
Created 2017-05-02
643 commits to main branch, last one 5 months ago
gear-genomics
dicey gear-genomics
4
48
gpl-3.0
6
In-silico PCR, primer design and padlock design for in-situ sequencing
pcr primer padlock amplicon in-silico gear-genomics primer-design sanger-sequencing in-situ-sequencing amplicon-sequencing
Created 2019-01-14
172 commits to main branch, last one 14 days ago
cafferychen777
MicrobiomeStat cafferychen777
5
31
unknown
2
Track, Analyze, Visualize: Unravel Your Microbiome's Temporal Pattern with MicrobiomeStat
dada2 omics qiime2 16s-rrna phyloseq microbiome statistics metagenomes visualization microbiome-data longitudinal-data amplicon-sequencing microbiome-analysis microbiome-workflow metagenomic-analysis omics-data-integration
Created 2023-07-21
658 commits to main branch, last one 2 days ago