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46

108

unknown

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A list of R environment based tools for microbiome data exploration, statistical analysis and visualization

16s-rrna amplicon microbiota metagenomics microbiome-data amplicon-sequencing microbiome-analysis microbial-communities

Created 2017-08-08

169 commits to master branch, last one about a year ago

36

103

mit

4

Current Challenges and Best Practice Protocols for Microbiome Analysis using Amplicon and Metagenomic Sequencing

16s-rrna assembly pipeline biomedical microbiome metagenomics best-practices bioinformatics amplicon-sequencing microbiome-analysis microbiome-workflow

Created 2018-11-16

101 commits to master branch, last one about a month ago

11

91

other

2

Make Picrust2 Output Analysis and Visualization Easier

16s-rrna picrust2 tax4fun2 microbiome microbiota metagenomics visualization functional-data metagenomic-analysis

Created 2022-12-17

273 commits to main branch, last one 3 months ago

3

28

unknown

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Track, Analyze, Visualize: Unravel Your Microbiome's Temporal Pattern with MicrobiomeStat

dada2 omics qiime2 16s-rrna phyloseq microbiome statistics metagenomes visualization microbiome-data longitudinal-data amplicon-sequencing microbiome-analysis microbiome-workflow metagenomic-analysis omics-data-integration

Created 2023-07-21

594 commits to main branch, last one 12 days ago